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contig_metadata

24 rows where bioproject = "PRJNA529241" and tax_clade = "core chlorophytes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 24 ✖

bioproject 1

  • PRJNA529241 · 24 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
499548 499548 PRJNA529241_P_NODE_25201_length_418_cov_5.566929_g22910_i0 PRJNA529241 25201 418 5.566929 23.26976322 Jenufa minuta 993092 Plants Plants 634 3.14e-177   NTclustered gi|959124355|ref|NC_028582.1| 993092 g22910 i0 94.076 218.698564593301 422 18 100 5 1 418 103421 103003 Jenufa minuta culture-collection CAUP:H 8102 chloroplast, complete genome blastn 91416 634 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae     Jenufa Jenufa minuta
1773369 1773369 PRJNA529241_P_NODE_113942_length_207_cov_1.100000_g111620_i0 PRJNA529241 113942 207 1.1 2.277 Prasiola crispa 173492 Plants Plants 333 5.779999999999999e-87   NTclustered gi|806639636|gb|KR017749.1| 173492 g111620 i0 95.673 131.275362318841 208 7 100 2 1 207 3106 2900 Prasiola crispa clone Contig2 chloroplast sequence blastn 27174 333 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Prasiolaceae Prasiola Prasiola crispa
1773878 1773878 PRJNA529241_P_NODE_151562_length_185_cov_1.844595_g149240_i0 PRJNA529241 151562 185 1.844595 3.41250075 Jenufa minuta 993092 Plants Plants 342 8.369999999999999e-90   NTclustered gi|959124355|ref|NC_028582.1| 993092 g149240 i0 100 9.37837837837838 185 0 100 0 1 185 104694 104878 Jenufa minuta culture-collection CAUP:H 8102 chloroplast, complete genome blastn 1735 342 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae     Jenufa Jenufa minuta
3049787 3049787 PRJNA529241_P_NODE_160363_length_181_cov_1.083333_g158041_i0 PRJNA529241 160363 181 1.083333 1.96083273 Coccomyxa 41891 Plants Plants 121 2.2799999999999998e-32   NR XP_005646819.1 574566 g158041 i0 95 9.94475138121547 60 3 99.4 0 180 1 188 247 XP_005646819.1 ribosomal protein L8 component of cytosolic 80S ribosome and 60S large subunit [Coccomyxa subellipsoidea C-169] diamond 1800 121 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
3052179 3052179 PRJNA529241_P_NODE_451463_length_156_cov_1.638655_g449141_i0 PRJNA529241 451463 156 1.638655 2.5563018 Chlorella endosymbiont of Stentor polymorphus 2219871 Plants Plants 237 3.31e-58   NTclustered gi|1401669229|gb|MH295835.1| 2219871 g449141 i0 94.231 100.096153846154 156 8 100 1 1 156 1362 1208 Chlorella endosymbiont of Stentor polymorphus 28S ribosomal RNA gene, partial sequence blastn 15615 237 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella endosymbiont of Stentor polymorphus
4944414 4944414 PRJNA529241_P_NODE_49024_length_292_cov_1.686275_g46702_i0 PRJNA529241 49024 292 1.686275 4.923923 Watanabeales 2981622 Plants Plants 401 2.3299999999999993e-107   NTclustered gi|2663407540|emb|OY754499.1| 1274662 g46702 i0 91.497 149.544520547945 294 22 100 3 1 292 158144 157852 Coccomyxa viridis genome assembly, organelle: plastid blastn 43667 401 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa viridis
6219998 6219998 PRJNA529241_P_NODE_54345_length_279_cov_3.252066_g52023_i0 PRJNA529241 54345 279 3.252066 9.07326414 Trebouxiophyceae 75966 Plants Plants 508 1.27e-139   NTclustered gi|328349687|emb|FN298931.1| 3075 g52023 i0 99.64 98.8745519713262 278 1 99 0 1 278 10 287 Auxenochlorella protothecoides 18S rRNA gene (partial), ITS1, 5.8S rRNA gene, ITS2 and 28S rRNA gene (partial), strain CCAP 211/7A blastn 27586 508 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
8154186 8154186 PRJNA529241_P_NODE_457187_length_154_cov_2.717949_g454865_i0 PRJNA529241 457187 154 2.717949 4.18564146 Chlorella variabilis 554065 Plants Plants 54.7 0.004   NTclustered gi|552816487|ref|XM_005844636.1| 554065 g454865 i0 84.746 0.383116883116883 59 3 34 4 83 135 1292 1234 Chlorella variabilis hypothetical protein (CHLNCDRAFT_138627) mRNA, complete cds blastn 59 54.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
9427731 9427731 PRJNA529241_P_NODE_24948_length_421_cov_3.572917_g22657_i0 PRJNA529241 24948 421 3.572917 15.04198057 Auxenochlorella protothecoides 3075 Plants Plants 630 4.0899999999999984e-176   NTclustered gi|440136375|gb|JX857664.1| 3075 g22657 i0 97.832 47.0593824228028 369 1 88 3 53 421 388 27 Auxenochlorella protothecoides strain 0710 clone CHLPROCpK12 large subunit ribosomal RNA, partial sequence blastn 19812 630 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
11977518 11977518 PRJNA529241_P_NODE_157970_length_182_cov_1.344828_g155648_i0 PRJNA529241 157970 182 1.344828 2.44758696 Auxenochlorella protothecoides 3075 Plants Plants 337 3.82e-88   NTclustered gi|741870561|ref|NC_026009.1| 3075 g155648 i0 100 38.1923076923077 182 0 100 0 1 182 32661 32480 Auxenochlorella protothecoides mitochondrion, complete genome blastn 6951 337 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
11977520 11977520 PRJNA529241_P_NODE_158010_length_182_cov_1.344828_g155688_i0 PRJNA529241 158010 182 1.344828 2.44758696 Jenufa minuta 993092 Plants Plants 337 3.82e-88   NTclustered gi|959124355|ref|NC_028582.1| 993092 g155688 i0 100 99.6373626373626 182 0 100 0 1 182 46160 46341 Jenufa minuta culture-collection CAUP:H 8102 chloroplast, complete genome blastn 18134 337 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae     Jenufa Jenufa minuta
14527608 14527608 PRJNA529241_P_NODE_155712_length_183_cov_1.869863_g153390_i0 PRJNA529241 155712 183 1.869863 3.42184929 Jenufa minuta 993092 Plants Plants 333 4.97e-87   NTclustered gi|959124355|ref|NC_028582.1| 993092 g153390 i0 99.454 60.8087431693989 183 1 100 0 1 183 34814 34632 Jenufa minuta culture-collection CAUP:H 8102 chloroplast, complete genome blastn 11128 333 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae     Jenufa Jenufa minuta
15803471 15803471 PRJNA529241_P_NODE_423033_length_167_cov_1.130769_g420711_i0 PRJNA529241 423033 167 1.130769 1.88838423 Haematococcus lacustris 44745 Plants Plants 230 6.029999999999999e-56   NTclustered gi|1279575454|gb|MF683078.1| 44745 g420711 i0 92.025 442.922155688623 163 13 98 0 1 163 3843 3681 Haematococcus lacustris 16S ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence; chloroplast blastn 73968 230 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Haematococcus Haematococcus lacustris
17694660 17694660 PRJNA529241_P_NODE_7854_length_1081_cov_3.011494_g6616_i0 PRJNA529241 7854 1081 3.011494 32.55425014 Ulva 3118 Plants Plants 1181 0   NTclustered gi|2095862465|gb|MN853879.1| 3117 g6616 i0 86.761 110.894542090657 1065 136 98 5 19 1081 24427 23366 Ulva prolifera chloroplast, complete genome blastn 119877 1192 0.990771812080537 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulvales Ulvaceae Ulva Ulva prolifera
18352329 18352329 PRJNA529241_P_NODE_422695_length_167_cov_1.453846_g420373_i0 PRJNA529241 422695 167 1.453846 2.42792282 Jenufa minuta 993092 Plants Plants 274 2.75e-69   NTclustered gi|959124355|ref|NC_028582.1| 993092 g420373 i0 100 101.017964071856 148 0 89 0 20 167 45740 45887 Jenufa minuta culture-collection CAUP:H 8102 chloroplast, complete genome blastn 16870 274 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae     Jenufa Jenufa minuta
22175683 22175683 PRJNA529241_P_NODE_173898_length_175_cov_1.695652_g171576_i0 PRJNA529241 173898 175 1.695652 2.967391 Jenufa minuta 993092 Plants Plants 217 4.94e-52   NTclustered gi|1829768154|ref|NC_046780.1| 993092 g171576 i0 89.773 1.38285714285714 176 8 100 6 1 175 21660 21494 Jenufa minuta culture CAUP:H8102 mitochondrion, complete genome blastn 242 217 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae     Jenufa Jenufa minuta
24724471 24724471 PRJNA529241_P_NODE_13340_length_674_cov_6.676609_g11453_i0 PRJNA529241 13340 674 6.676609 45.00034466 Jenufa minuta 993092 Plants Plants 1243 0   NTclustered gi|959124355|ref|NC_028582.1| 993092 g11453 i0 100 135.43175074184 673 0 99 0 1 673 103484 104156 Jenufa minuta culture-collection CAUP:H 8102 chloroplast, complete genome blastn 91281 1243 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae     Jenufa Jenufa minuta
26902994 26902994 PRJNA529241_P_NODE_366581_length_173_cov_2.698529_g364259_i0 PRJNA529241 366581 173 2.698529 4.66845517 Eukaryota 2759 Plants Plants 47.4 2.93e-4   NR KAK9918745.1 248742 g364259 i0 91.3 8.0635838150289 23 2 39.9 0 100 168 168 190 KAK9918745.1 hypothetical protein WJX75_006512 [Coccomyxa subellipsoidea] diamond 1395 47.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
27282402 27282402 PRJNA529241_P_NODE_551103_length_151_cov_2.596491_g548781_i0 PRJNA529241 551103 151 2.596491 3.92070141 Chlorophyceae 3166 Plants Plants 48.5 5.46e-5   NR KXZ45106.1 33097 g548781 i0 60 1.1523178807947 30 12 59.6 0 150 61 71 100 KXZ45106.1 hypothetical protein GPECTOR_58g555 [Gonium pectorale] diamond 174 48.9 0.991820040899796 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Gonium Gonium pectorale
27756294 27756294 PRJNA529241_P_NODE_279964_length_173_cov_3.845588_g277642_i0 PRJNA529241 279964 173 3.845588 6.65286724 root 1 Root_unresolved Root_unresolved 42.4 0.02   NR KAI8469007.1 39955 g277642 i0 66.7 1.21387283236994 24 8 41.6 0 168 97 206 229 KAI8469007.1 MAG: major facilitator superfamily transporter [Monoraphidium minutum] diamond 210 42.7 0.992974238875878 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium minutum
29319452 29319452 PRJNA529241_P_NODE_167209_length_178_cov_1.078014_g164887_i0 PRJNA529241 167209 178 1.078014 1.91886492 Scenedesmus sp. NREL 46B-D3 2650976 Plants Plants 39.7 0.0423   NR KAF6261890.1 2650976 g164887 i0 42.9 0.471910112359551 28 16 47.2 0 74 157 32 59 KAF6261890.1 hypothetical protein COO60DRAFT_1499080 [Scenedesmus sp. NREL 46B-D3] diamond 84 39.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Scenedesmus Scenedesmus sp. NREL 46B-D3
30172144 30172144 PRJNA529241_P_NODE_244052_length_173_cov_4.573529_g241730_i0 PRJNA529241 244052 173 4.573529 7.91220517 Trebouxia sp. C 2796353 Plants Plants 53.9 1.62e-6   NR KAL3135587.1 3373144 g241730 i0 60.4 2.4971098265896 48 16 83.2 1 1 144 88 132 KAL3135587.1 hypothetical protein ABBQ38_006067 [Trebouxia sp. C0009 RCD-2024] diamond 432 53.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. C0009 RCD-2024
30661371 30661371 PRJNA529241_P_NODE_420153_length_168_cov_1.190840_g417831_i0 PRJNA529241 420153 168 1.19084 2.0006112 Chlorophyta 3041 Plants Plants 71.2 1.61e-14   NR KAF5837181.1 3046 g417831 i0 77.3 2.25 44 10 78.6 0 168 37 42 85 KAF5837181.1 60S ribosomal protein L38 [Dunaliella salina] diamond 378 71.6 0.994413407821229 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Dunaliellaceae Dunaliella Dunaliella salina
31025437 31025437 PRJNA529241_P_NODE_374755_length_173_cov_2.625000_g372433_i0 PRJNA529241 374755 173 2.625 4.54125 Chlamydomonas incerta 51695 Plants Plants 45.8 0.00118   NR KAG2426295.1 51695 g372433 i0 54.5 0.763005780346821 44 18 72.8 1 171 46 141 184 KAG2426295.1 hypothetical protein HXX76_013052 [Chlamydomonas incerta] diamond 132 45.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas incerta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;