RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA529241", tax_clade = "ac1 cluster" and tax_kingdom = "Bacillati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Bacillati · 1 ✖

tax_clade 1

  • ac1 cluster · 1 ✖

bioproject 1

  • PRJNA529241 · 1 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29082244 29082244 PRJNA529241_P_NODE_518648_length_151_cov_4.017544_g516326_i0 PRJNA529241 518648 151 4.017544 6.06649144 Bacteria 2 Bacteria Bacteria 53.5 1.18e-6   NR KRO33541.1 1655573 g516326 i0 100 14.7615894039735 24 0 47.7 0 149 78 58 81 KRO33541.1 MAG: uridylate kinase [Actinobacteria bacterium BACL2 MAG-121220-bin52] diamond 2229 53.5 1 Bacteria ac1 cluster Bacillati Actinomycetota Actinomycetes       Actinobacteria bacterium BACL2 MAG-121220-bin52

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;