RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA529241", tax_clade = "PVC group" and tax_phylum = "Candidatus Omnitrophota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Omnitrophota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA529241 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31879023 31879023 PRJNA529241_P_NODE_532257_length_151_cov_3.438596_g529935_i0 PRJNA529241 532257 151 3.438596 5.19227996 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 95.5 1.72e-21   NR MDP2927677.1 2035772 g529935 i0 68.2 1.3112582781457 66 4 97.4 1 149 3 253 318 MDP2927677.1 lipopolysaccharide biosynthesis protein RfbH [Candidatus Omnitrophota bacterium] diamond 198 95.5 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
32889963 32889963 PRJNA529241_P_NODE_475120_length_151_cov_7.956140_g472798_i0 PRJNA529241 475120 151 7.95614 12.0137714 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 46.6 2e-4   NR MEK6565067.1 2035772 g472798 i0 50 2.3841059602649 40 20 79.5 0 32 151 106 145 MEK6565067.1 precorrin-3B C(17)-methyltransferase [Candidatus Omnitrophota bacterium] diamond 360 46.6 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;