RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA529241", tax_clade = "Opisthokonta" and tax_phylum = "Platyhelminthes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 6 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 6 ✖

bioproject 1

  • PRJNA529241 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11976874 11976874 PRJNA529241_P_NODE_109890_length_209_cov_14.296512_g107568_i0 PRJNA529241 109890 209 14.296512 29.87971008 Spirometra erinaceieuropaei 99802 Platyhelminthes Platyhelminthes 292 9.92e-75   NTclustered gi|690816508|emb|LN310741.1| 99802 g107568 i0 91.866 5.82775119617225 209 17 100 0 1 209 439 231 Spirometra erinaceieuropaei genome assembly S_erinaceieuropaei, scaffold SPER_scaffold0219101 blastn 1218 292 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei
11981162 11981162 PRJNA529241_P_NODE_70670_length_251_cov_4.953271_g68348_i0 PRJNA529241 70670 251 4.953271 12.43271021 Dicrocoelium dendriticum 57078 Platyhelminthes Platyhelminthes 52.8 0.023   NTclustered gi|687688392|emb|LK602674.1| 57078 g68348 i0 100 0.111553784860558 28 0 11 0 124 151 630 603 Dicrocoelium dendriticum genome assembly D_dendriticum_Leon_v1_0_4, scaffold DDEL_contig0017416 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Dicrocoeliidae Dicrocoelium Dicrocoelium dendriticum
11981531 11981531 PRJNA529241_P_NODE_97870_length_219_cov_7.851648_g95548_i0 PRJNA529241 97870 219 7.851648 17.19510912 Dicrocoelium dendriticum 57078 Platyhelminthes Platyhelminthes 52.8 0.019   NTclustered gi|687688392|emb|LK602674.1| 57078 g95548 i0 100 0.127853881278539 28 0 13 0 69 96 603 630 Dicrocoelium dendriticum genome assembly D_dendriticum_Leon_v1_0_4, scaffold DDEL_contig0017416 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Dicrocoeliidae Dicrocoelium Dicrocoelium dendriticum
14527850 14527850 PRJNA529241_P_NODE_177912_length_174_cov_1.233577_g175590_i0 PRJNA529241 177912 174 1.233577 2.14642398 Bipalium kewense 66750 Platyhelminthes Platyhelminthes 307 2.8300000000000005e-79   NTclustered gi|4104154|gb|AF033039.1|AF033039 66750 g175590 i0 98.276 98.9597701149425 174 3 100 0 1 174 706 879 Bipalium kewense 18S ribosomal RNA gene, complete sequence blastn 17219 307 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Tricladida Geoplanidae Bipalium Bipalium kewense
28845704 28845704 PRJNA529241_P_NODE_112048_length_208_cov_3.432749_g109726_i0 PRJNA529241 112048 208 3.432749 7.14011792 Schistocephalus solidus 70667 Platyhelminthes Platyhelminthes 40.8 0.0301   NR VDM05104.1 70667 g109726 i0 50 0.346153846153846 24 12 34.6 0 20 91 18 41 VDM05104.1 unnamed protein product [Schistocephalus solidus] diamond 72 40.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Schistocephalus Schistocephalus solidus
30235385 30235385 PRJNA529241_P_NODE_286432_length_173_cov_3.750000_g284110_i0 PRJNA529241 286432 173 3.75 6.4875 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 43.1 0.00134   NR AAM80478.1 6182 g284110 i0 75 0.416184971098266 24 6 41.6 0 76 5 25 48 AAM80478.1 Hm2 protein [Schistosoma japonicum] diamond 72 43.1 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;