RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA529241" and tax_clade = "Discoba"

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tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 6 ✖

bioproject 1

  • PRJNA529241 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18353272 18353272 PRJNA529241_P_NODE_53995_length_279_cov_10.409091_g51673_i0 PRJNA529241 53995 279 10.409091 29.04136389 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 294 3.87e-75   NTclustered gi|2031941177|emb|OD957840.1| 5763 g51673 i0 87.259 5.96415770609319 259 31 92 2 1 258 163 420 Naegleria fowleri Karachi_NF001 strain blastn 1664 294 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
22178053 22178053 PRJNA529241_P_NODE_47338_length_296_cov_6.745174_g45016_i0 PRJNA529241 47338 296 6.745174 19.96571504 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 121 7.429999999999999e-23   NTclustered gi|2031939661|emb|OD957602.1| 5763 g45016 i0 89.474 0.320945945945946 95 10 32 0 1 95 142 48 Naegleria fowleri Karachi_NF001 strain blastn 95 121 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
22792297 22792297 PRJNA529241_P_NODE_227958_length_173_cov_5.036765_g225636_i0 PRJNA529241 227958 173 5.036765 8.71360345 Euglena 3038 Euglenozoa other_Eukaryota 54.7 0.004   NTclustered gi|30410708|ref|NC_001603.2| 3039 g225636 i0 100 0.335260115606936 29 0 17 0 123 151 91117 91089 Euglena gracilis chloroplast, complete genome blastn 58 54.7 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Euglena Euglena gracilis
24066609 24066609 PRJNA529241_P_NODE_130939_length_195_cov_11.670886_g128617_i0 PRJNA529241 130939 195 11.670886 22.7582277 Trypanosomatidae 5654 Euglenozoa other_Eukaryota 259 9.25e-65   NTclustered gi|2414483|emb|Y00055.1| 5656 g128617 i0 91.146 119.984615384615 192 16 98 1 1 192 7025 6835 Crithidia fasciculata ribosomal DNA repeat (complete) blastn 23397 261 0.992337164750958 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Crithidia Crithidia fasciculata
24727970 24727970 PRJNA529241_P_NODE_56380_length_274_cov_10.742616_g54058_i0 PRJNA529241 56380 274 10.742616 29.43476784 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 193 1.4200000000000001e-44   NTclustered gi|2031940093|emb|OD957679.1| 5763 g54058 i0 80.723 0.908759124087591 249 46 91 2 21 268 251 4 Naegleria fowleri Karachi_NF001 strain blastn 249 193 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
31563144 31563144 PRJNA529241_P_NODE_476836_length_151_cov_7.578947_g474514_i0 PRJNA529241 476836 151 7.578947 11.44420997 Leptomonas pyrrhocoris 157538 Euglenozoa other_Eukaryota 41.6 0.0277   NR XP_015655115.1 157538 g474514 i0 64 0.496688741721854 25 9 49.7 0 2 76 328 352 XP_015655115.1 putative nicotinate phosphoribosyltransferase [Leptomonas pyrrhocoris] diamond 75 41.6 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leptomonas Leptomonas pyrrhocoris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;