RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where bioproject = "PRJNA529241", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Altimarinota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Altimarinota · 8 ✖

tax_clade 1

  • Bacteria candidate phyla · 8 ✖

bioproject 1

  • PRJNA529241 · 8 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27362211 27362211 PRJNA529241_P_NODE_345203_length_173_cov_2.933824_g342881_i0 PRJNA529241 345203 173 2.933824 5.07551552 Candidatus Gracilibacteria bacterium GN 2044595 Bacteria Bacteria 44.7 0.00308   NR RAL56192.1 1914866 g342881 i0 100 0.364161849710983 21 0 36.4 0 14 76 697 717 RAL56192.1 DNA-directed RNA polymerase subunit beta' [Candidatus Gracilibacteria bacterium GN02-873] diamond 63 44.7 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium GN02-873
28309234 28309234 PRJNA529241_P_NODE_275146_length_173_cov_3.926471_g272824_i0 PRJNA529241 275146 173 3.926471 6.79279483 Candidatus Gracilibacteria bacterium GN 2044595 Bacteria Bacteria 50.4 2.68e-5   NR RAL57666.1 1912928 g272824 i0 100 0.416184971098266 24 0 41.6 0 171 100 5 28 RAL57666.1 hypothetical protein BLD25_01915 [Candidatus Gracilibacteria bacterium GN02-872] diamond 72 50.4 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium GN02-872
28530331 28530331 PRJNA529241_P_NODE_290447_length_173_cov_3.691176_g288125_i0 PRJNA529241 290447 173 3.691176 6.38573448 Candidatus Gracilibacteria bacterium GN 2044595 Bacteria Bacteria 47.8 2.29e-4   NR RAL56102.1 1914866 g288125 i0 100 0.416184971098266 24 0 41.6 0 74 3 6 29 RAL56102.1 hypothetical protein BLM37_01025 [Candidatus Gracilibacteria bacterium GN02-873] diamond 72 47.8 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium GN02-873
28625188 28625188 PRJNA529241_P_NODE_567547_length_150_cov_5.008850_g565225_i0 PRJNA529241 567547 150 5.00885 7.513275 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 53.5 1.58e-6   NR MBP9779925.1 2044595 g565225 i0 92 0.5 25 2 50 0 75 149 311 335 MBP9779925.1 hypothetical protein [Candidatus Altimarinota bacterium] diamond 75 53.5 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
29067055 29067055 PRJNA529241_P_NODE_157048_length_182_cov_4.303448_g154726_i0 PRJNA529241 157048 182 4.303448 7.83227536 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 50.1 4.29e-5   NR RKW25249.1 2044595 g154726 i0 88 1.23626373626374 25 3 41.2 0 75 1 114 138 RKW25249.1 MAG: hypothetical protein D8B45_01035 [Candidatus Altimarinota bacterium] diamond 225 50.1 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
29445581 29445581 PRJNA529241_P_NODE_116550_length_205_cov_1.857143_g114228_i0 PRJNA529241 116550 205 1.857143 3.80714315 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 67.4 1.41e-12   NR MBP7806431.1 2044595 g114228 i0 52.8 2.31219512195122 53 25 77.6 0 32 190 4 56 MBP7806431.1 DUF2958 domain-containing protein [Candidatus Altimarinota bacterium] diamond 474 67.4 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
29982680 29982680 PRJNA529241_P_NODE_257071_length_173_cov_4.279412_g254749_i0 PRJNA529241 257071 173 4.279412 7.40338276 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 52.4 5.71e-6   NR HBB26890.1 2044595 g254749 i0 96 1.30057803468208 25 1 43.4 0 75 1 123 147 HBB26890.1 Fe-S cluster assembly protein SufB [Candidatus Altimarinota bacterium] diamond 225 52.4 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
30914309 30914309 PRJNA529241_P_NODE_458274_length_154_cov_1.000000_g455952_i0 PRJNA529241 458274 154 1 1.54 Bacteria 2 Bacteria Bacteria 60.8 1.12e-9   NR RKW19955.1 2044595 g455952 i0 73.7 2.22077922077922 38 10 74 0 154 41 139 176 RKW19955.1 MAG: molecular chaperone DnaK, partial [Candidatus Altimarinota bacterium] diamond 342 60.8 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;