RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA529241", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 9 ✖

tax_clade 1

  • Amoebozoa · 9 ✖

bioproject 1

  • PRJNA529241 · 9 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3053508 3053508 PRJNA529241_P_NODE_7783_length_1090_cov_2.707502_g6555_i0 PRJNA529241 7783 1090 2.707502 29.511771800000002 Paramoeba pemaquidensis 180228 Discosea other_Eukaryota 99 1.4e-15   NTclustered gi|1079488025|ref|NC_031417.1| 180228 g6555 i0 77.348 7.75779816513761 181 32 16 5 1 173 33371 33192 Paramoeba pemaquidensis culture-collection CCAP:1560/4 mitochondrion, complete genome blastn 8456 99 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba pemaquidensis
10704886 10704886 PRJNA529241_P_NODE_427589_length_165_cov_2.429688_g425267_i0 PRJNA529241 427589 165 2.429688 4.0089852 Endostelium crystalliferum 1485074 Discosea other_Eukaryota 305 9.59e-79   NTclustered gi|608606227|gb|KF705034.1| 1485074 g425267 i0 100 1 165 0 100 0 1 165 630 794 Endostelium crystalliferum 18S ribosomal RNA gene, partial sequence blastn 165 305 1 Eukaryota Amoebozoa   Discosea Flabellinia     Endostelium Endostelium crystalliferum
14527244 14527244 PRJNA529241_P_NODE_123972_length_200_cov_1.595092_g121650_i0 PRJNA529241 123972 200 1.595092 3.190184 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 54.7 0.005   NTclustered gi|470512462|ref|XM_004352440.1| 1257118 g121650 i0 100 0.145 29 0 15 0 151 179 714 686 Acanthamoeba castellanii str. Neff 3' exoribonuclease family, domain 1 domain containing protein (ACA1_360300), partial mRNA blastn 29 54.7 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27077526 27077526 PRJNA529241_P_NODE_455162_length_155_cov_0.991525_g452840_i0 PRJNA529241 455162 155 0.991525 1.53686375 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 55.8 2.65e-7   NR XP_004341947.1 1257118 g452840 i0 55.8 0.832258064516129 43 19 83.2 0 1 129 692 734 XP_004341947.1 gelation factor, putative [Acanthamoeba castellanii str. Neff] diamond 129 55.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27077559 27077559 PRJNA529241_P_NODE_551622_length_151_cov_1.710526_g549300_i0 PRJNA529241 551622 151 1.710526 2.58289426 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 51.2 1.02e-5   NR XP_004337717.1 1257118 g549300 i0 55.1 0.973509933774834 49 15 97.4 1 4 150 121 162 XP_004337717.1 ribosomal L18p/L5e family [Acanthamoeba castellanii str. Neff] diamond 147 51.2 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29319441 29319441 PRJNA529241_P_NODE_143689_length_189_cov_1.763158_g141367_i0 PRJNA529241 143689 189 1.763158 3.33236862 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 43.1 0.013   NR XP_004367870.1 1257118 g141367 i0 44.2 1.53968253968254 52 29 82.5 0 187 32 284 335 XP_004367870.1 ribosomal protein L4/L1 family [Acanthamoeba castellanii str. Neff] diamond 291 43.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30488194 30488194 PRJNA529241_P_NODE_192933_length_173_cov_6.750000_g190611_i0 PRJNA529241 192933 173 6.75 11.6775 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 62.8 1.24e-9   NR XP_004334568.1 1257118 g190611 i0 59 1.05780346820809 61 19 98.8 2 171 1 98 156 XP_004334568.1 paired amphipathic helix protein sin3, putative [Acanthamoeba castellanii str. Neff] diamond 183 62.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30677563 30677563 PRJNA529241_P_NODE_145613_length_188_cov_1.807947_g143291_i0 PRJNA529241 145613 188 1.807947 3.39894036 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 86.7 2.31e-19   NR XP_004336000.1 1257118 g143291 i0 67.7 3.95744680851064 62 20 98.9 0 2 187 28 89 XP_004336000.1 ribosomal protein S4, putative, partial [Acanthamoeba castellanii str. Neff] diamond 744 86.7 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31404846 31404846 PRJNA529241_P_NODE_394736_length_173_cov_2.279412_g392414_i0 PRJNA529241 394736 173 2.279412 3.94338276 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 43.1 0.0107   NR XP_004333480.1 1257118 g392414 i0 72 0.84971098265896 25 7 43.4 0 173 99 369 393 XP_004333480.1 uncharacterized protein ACA1_122080 [Acanthamoeba castellanii str. Neff] diamond 147 43.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;