RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

21 rows where bioproject = "PRJNA529241" and tax_clade = "Amoebozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 3

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 21 ✖

bioproject 1

  • PRJNA529241 · 21 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
502563 502563 PRJNA529241_P_NODE_79361_length_240_cov_2.477833_g77039_i0 PRJNA529241 79361 240 2.477833 5.9467992 Physarum polycephalum 5791 Evosea other_Eukaryota 159 1.24e-34   NTclustered gi|326632058|gb|HQ849399.1| 5791 g77039 i0 86.713 47.8958333333333 143 19 60 0 2 144 654 796 Physarum polycephalum strain M3CVIII 23S large subunit ribosomal RNA, complete sequence; mitochondrial blastn 11495 159 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
3051969 3051969 PRJNA529241_P_NODE_431363_length_163_cov_10.611111_g429041_i0 PRJNA529241 431363 163 10.611111 17.29611093 Didymium nigripes 75757 Evosea other_Eukaryota 152 1.3e-32   NTclustered gi|568219335|gb|KF743889.1| 75757 g429041 i0 86.111 15.6625766871166 144 16 87 4 22 163 621 480 Didymium nigripes voucher MCCNNU00130 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 2553 152 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium nigripes
3053508 3053508 PRJNA529241_P_NODE_7783_length_1090_cov_2.707502_g6555_i0 PRJNA529241 7783 1090 2.707502 29.511771800000002 Paramoeba pemaquidensis 180228 Discosea other_Eukaryota 99 1.4e-15   NTclustered gi|1079488025|ref|NC_031417.1| 180228 g6555 i0 77.348 7.75779816513761 181 32 16 5 1 173 33371 33192 Paramoeba pemaquidensis culture-collection CCAP:1560/4 mitochondrion, complete genome blastn 8456 99 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba pemaquidensis
9427058 9427058 PRJNA529241_P_NODE_164588_length_179_cov_1.373239_g162266_i0 PRJNA529241 164588 179 1.373239 2.45809781 Polyschismium peyerimhoffii 2911783 Evosea other_Eukaryota 187 3.9799999999999985e-43   NTclustered gi|2161226355|gb|MZ313553.1| 2911783 g162266 i0 87.73 32.4357541899441 163 17 91 3 18 179 3520 3680 Polyschismium peyerimhoffii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 5806 187 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Polyschismium Polyschismium peyerimhoffii
10704886 10704886 PRJNA529241_P_NODE_427589_length_165_cov_2.429688_g425267_i0 PRJNA529241 427589 165 2.429688 4.0089852 Endostelium crystalliferum 1485074 Discosea other_Eukaryota 305 9.59e-79   NTclustered gi|608606227|gb|KF705034.1| 1485074 g425267 i0 100 1 165 0 100 0 1 165 630 794 Endostelium crystalliferum 18S ribosomal RNA gene, partial sequence blastn 165 305 1 Eukaryota Amoebozoa   Discosea Flabellinia     Endostelium Endostelium crystalliferum
14527244 14527244 PRJNA529241_P_NODE_123972_length_200_cov_1.595092_g121650_i0 PRJNA529241 123972 200 1.595092 3.190184 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 54.7 0.005   NTclustered gi|470512462|ref|XM_004352440.1| 1257118 g121650 i0 100 0.145 29 0 15 0 151 179 714 686 Acanthamoeba castellanii str. Neff 3' exoribonuclease family, domain 1 domain containing protein (ACA1_360300), partial mRNA blastn 29 54.7 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
14528839 14528839 PRJNA529241_P_NODE_31032_length_370_cov_5.909910_g28721_i0 PRJNA529241 31032 370 5.90991 21.866667 Didymium iridis 5793 Evosea other_Eukaryota 176 2e-39   NTclustered gi|2687|emb|X60210.1| 5793 g28721 i0 89.286 1.09189189189189 140 15 38 0 223 362 5263 5124 D.iridis LSU rRNA gene blastn 404 176 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium iridis
22179207 22179207 PRJNA529241_P_NODE_80158_length_239_cov_2.539604_g77836_i0 PRJNA529241 80158 239 2.539604 6.06965356 Cavenderia fasciculata 261658 Evosea other_Eukaryota 52.8 0.021   NTclustered gi|470270463|ref|XM_004362656.1| 261658 g77836 i0 100 0.351464435146443 28 0 12 0 153 180 173 146 Cavenderia fasciculata uncharacterized protein (DFA_03107), partial mRNA blastn 84 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
24727243 24727243 PRJNA529241_P_NODE_469440_length_152_cov_1.008696_g467118_i0 PRJNA529241 469440 152 1.008696 1.53321792 Physarum albescens 289948 Evosea other_Eukaryota 259 6.82e-65   NTclustered gi|2616764637|gb|OR769406.1| 289948 g467118 i0 97.368 89.7697368421053 152 4 100 0 1 152 2 153 Physarum albescens voucher MYX9253 small subunit ribosomal RNA gene, partial sequence blastn 13645 259 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum albescens
27077526 27077526 PRJNA529241_P_NODE_455162_length_155_cov_0.991525_g452840_i0 PRJNA529241 455162 155 0.991525 1.53686375 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 55.8 2.65e-7   NR XP_004341947.1 1257118 g452840 i0 55.8 0.832258064516129 43 19 83.2 0 1 129 692 734 XP_004341947.1 gelation factor, putative [Acanthamoeba castellanii str. Neff] diamond 129 55.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27077559 27077559 PRJNA529241_P_NODE_551622_length_151_cov_1.710526_g549300_i0 PRJNA529241 551622 151 1.710526 2.58289426 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 51.2 1.02e-5   NR XP_004337717.1 1257118 g549300 i0 55.1 0.973509933774834 49 15 97.4 1 4 150 121 162 XP_004337717.1 ribosomal L18p/L5e family [Acanthamoeba castellanii str. Neff] diamond 147 51.2 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27772680 27772680 PRJNA529241_P_NODE_391044_length_173_cov_2.397059_g388722_i0 PRJNA529241 391044 173 2.397059 4.14691207 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 50.4 9.2e-6   NR YP_003540828.1 5778 g388722 i0 92 0.433526011560694 25 2 43.4 0 3 77 56 80 YP_003540828.1 ribosomal protein S11 [Vermamoeba vermiformis] diamond 75 50.4 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
28419250 28419250 PRJNA529241_P_NODE_300606_length_173_cov_3.536765_g298284_i0 PRJNA529241 300606 173 3.536765 6.11860345 Acytosteliales 2058181 Evosea other_Eukaryota 53.9 1.64e-6   NR XP_004362729.1 261658 g298284 i0 59.5 1.45664739884393 42 15 69.4 1 121 2 249 290 XP_004362729.1 putative CMF receptor CMFR1 [Cavenderia fasciculata] diamond 252 53.9 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
29067105 29067105 PRJNA529241_P_NODE_392488_length_173_cov_2.360294_g390166_i0 PRJNA529241 392488 173 2.360294 4.08330862 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 59.3 9.26e-9   NR PRP78360.1 1890364 g390166 i0 50.9 0.988439306358382 57 23 98.8 1 3 173 122 173 PRP78360.1 hypothetical protein PROFUN_13755 [Planoprotostelium fungivorum] diamond 171 59.3 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
29319441 29319441 PRJNA529241_P_NODE_143689_length_189_cov_1.763158_g141367_i0 PRJNA529241 143689 189 1.763158 3.33236862 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 43.1 0.013   NR XP_004367870.1 1257118 g141367 i0 44.2 1.53968253968254 52 29 82.5 0 187 32 284 335 XP_004367870.1 ribosomal protein L4/L1 family [Acanthamoeba castellanii str. Neff] diamond 291 43.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29351242 29351242 PRJNA529241_P_NODE_438229_length_161_cov_1.258065_g435907_i0 PRJNA529241 438229 161 1.258065 2.02548465 Dictyostelium discoideum AX4 352472 Evosea other_Eukaryota 91.3 9.86e-21   NR XP_644192.1 352472 g435907 i0 75.5 2.96273291925466 53 13 98.8 0 161 3 95 147 XP_644192.1 60S ribosomal protein L8 [Dictyostelium discoideum AX4] diamond 477 91.3 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
29603345 29603345 PRJNA529241_P_NODE_247870_length_173_cov_4.477941_g245548_i0 PRJNA529241 247870 173 4.477941 7.74683793 Tieghemostelium lacteum 361077 Evosea other_Eukaryota 74.7 7.71e-14   NR KYQ94354.1 361077 g245548 i0 66.7 0.988439306358382 57 15 98.8 1 3 173 676 728 KYQ94354.1 hypothetical protein DLAC_04650 [Tieghemostelium lacteum] diamond 171 74.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Raperosteliaceae Tieghemostelium Tieghemostelium lacteum
29776651 29776651 PRJNA529241_P_NODE_346291_length_173_cov_2.911765_g343969_i0 PRJNA529241 346291 173 2.911765 5.03735345 root 1 Root_unresolved Root_unresolved 46.2 8.45e-4   NR PRP89446.1 1890364 g343969 i0 72 0.867052023121387 25 7 43.4 0 2 76 27 51 PRP89446.1 Diacetyl/L-xylulose reductase [Planoprotostelium fungivorum] diamond 150 46.2 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
30488194 30488194 PRJNA529241_P_NODE_192933_length_173_cov_6.750000_g190611_i0 PRJNA529241 192933 173 6.75 11.6775 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 62.8 1.24e-9   NR XP_004334568.1 1257118 g190611 i0 59 1.05780346820809 61 19 98.8 2 171 1 98 156 XP_004334568.1 paired amphipathic helix protein sin3, putative [Acanthamoeba castellanii str. Neff] diamond 183 62.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30677563 30677563 PRJNA529241_P_NODE_145613_length_188_cov_1.807947_g143291_i0 PRJNA529241 145613 188 1.807947 3.39894036 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 86.7 2.31e-19   NR XP_004336000.1 1257118 g143291 i0 67.7 3.95744680851064 62 20 98.9 0 2 187 28 89 XP_004336000.1 ribosomal protein S4, putative, partial [Acanthamoeba castellanii str. Neff] diamond 744 86.7 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31404846 31404846 PRJNA529241_P_NODE_394736_length_173_cov_2.279412_g392414_i0 PRJNA529241 394736 173 2.279412 3.94338276 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 43.1 0.0107   NR XP_004333480.1 1257118 g392414 i0 72 0.84971098265896 25 7 43.4 0 173 99 369 393 XP_004333480.1 uncharacterized protein ACA1_122080 [Acanthamoeba castellanii str. Neff] diamond 147 43.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;