RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

15 rows where bioproject = "PRJNA529224" and tax_phylum = "Rotifera"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Rotifera · 15 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA529224 · 15 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
498015 498015 PRJNA529224_S_NODE_641_length_245_cov_24.601852_g634_i0 PRJNA529224 641 245 24.601852 60.2745374 Brachionus urceolaris 204736 Rotifera other_Eukaryota 342 1.17e-89   NTclustered gi|72153738|gb|DQ089740.1| 204736 g634 i0 91.87 46.4040816326531 246 19 100 1 1 245 1797 2042 Brachionus urceolaris 28S ribosomal RNA gene, partial sequence blastn 11369 342 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus urceolaris
1114426 1114426 PRJNA529224_S_NODE_1201_length_189_cov_11.831250_g1194_i0 PRJNA529224 1201 189 11.83125 22.3610625 Ploima 84394 Rotifera other_Eukaryota 287 4.08e-73   NTclustered gi|37788190|gb|AY218143.1| 231620 g1194 i0 95.055 85.3068783068783 182 9 96 0 1 182 182 1 Euchlanis dilatata 28S ribosomal RNA gene, partial sequence blastn 16123 289 0.993079584775087 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Euchlanis Euchlanis dilatata
1114432 1114432 PRJNA529224_S_NODE_1421_length_178_cov_28.604027_g1414_i0 PRJNA529224 1421 178 28.604027 50.91516806 Metazoa 33208 Rotifera other_Eukaryota 327 2.23e-85   NTclustered gi|37785582|gb|AY210469.1| 96448 g1414 i0 100 98.2415730337079 177 0 99 0 2 178 2974 3150 Philodina roseola 28S ribosomal RNA gene, partial sequence blastn 17487 327 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina roseola
4324918 4324918 PRJNA529224_S_NODE_1664_length_162_cov_25.556391_g1657_i0 PRJNA529224 1664 162 25.556391 41.40135342 Polyarthra remata 360693 Rotifera other_Eukaryota 255 9.570000000000001e-64   NTclustered gi|83285205|gb|DQ297752.1| 360693 g1657 i0 95.062 77.8148148148148 162 8 100 0 1 162 75 236 Polyarthra remata 28S ribosomal RNA gene, partial sequence blastn 12606 255 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Synchaetidae Polyarthra Polyarthra remata
11317657 11317657 PRJNA529224_S_NODE_1269_length_185_cov_16.602564_g1262_i0 PRJNA529224 1269 185 16.602564 30.7147434 Ploima 84394 Rotifera other_Eukaryota 292 8.55e-75   NTclustered gi|61200811|gb|AY829085.1| 84397 g1262 i0 95.135 13.7567567567568 185 9 100 0 1 185 1555 1739 Asplanchna sieboldi 28S ribosomal RNA gene, partial sequence blastn 2545 292 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Asplanchnidae Asplanchna Asplanchna sieboldii
11976721 11976721 PRJNA529224_S_NODE_110_length_446_cov_17.959233_g103_i0 PRJNA529224 110 446 17.959233 80.09817918 Mytilina ventralis 360682 Rotifera other_Eukaryota 496 1.6599999999999998e-135   NTclustered gi|83285200|gb|DQ297747.1| 360682 g103 i0 86.801 78.1457399103139 447 55 99 4 3 446 287 732 Mytilina ventralis 28S ribosomal RNA gene, partial sequence blastn 34853 496 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Mytilina Mytilina ventralis
11976723 11976723 PRJNA529224_S_NODE_1270_length_185_cov_15.403846_g1263_i0 PRJNA529224 1270 185 15.403846 28.4971151 Asplanchna sieboldii 84397 Rotifera other_Eukaryota 318 1.41e-82   NTclustered gi|61200811|gb|AY829085.1| 84397 g1263 i0 97.826 13.6864864864865 184 4 99 0 2 185 1556 1739 Asplanchna sieboldi 28S ribosomal RNA gene, partial sequence blastn 2532 318 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Asplanchnidae Asplanchna Asplanchna sieboldii
13251838 13251838 PRJNA529224_S_NODE_1111_length_198_cov_17.224852_g1104_i0 PRJNA529224 1111 198 17.224852 34.10520696 Abrochtha meselsoni 338310 Rotifera other_Eukaryota 361 2.51e-95   NTclustered gi|2537903784|gb|KM043249.2| 338310 g1104 i0 99.497 96.6818181818182 199 0 100 1 1 198 249 51 Abrochtha meselsoni voucher Angl_1_1 18S ribosomal RNA gene, partial sequence blastn 19143 361 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinavida Philodinavidae Abrochtha Abrochtha meselsoni
17692363 17692363 PRJNA529224_S_NODE_614_length_249_cov_24.872727_g607_i0 PRJNA529224 614 249 24.872727 61.93309023 Brachionus 10194 Rotifera other_Eukaryota 335 2e-87   NTclustered gi|478683563|gb|KC193096.1| 104777 g607 i0 91.803 102.248995983936 244 14 96 5 1 240 2649 2890 Brachionus calyciflorus 28S ribosomal RNA gene, partial sequence blastn 25460 335 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus calyciflorus
18349489 18349489 PRJNA529224_S_NODE_115_length_443_cov_13.405797_g108_i0 PRJNA529224 115 443 13.405797 59.38768071 Polyarthra remata 360693 Rotifera other_Eukaryota 671 0   NTclustered gi|83285205|gb|DQ297752.1| 360693 g108 i0 94.104 78.6975169300226 441 26 99 0 3 443 305 745 Polyarthra remata 28S ribosomal RNA gene, partial sequence blastn 34863 671 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Synchaetidae Polyarthra Polyarthra remata
18966070 18966070 PRJNA529224_S_NODE_1855_length_154_cov_16.872000_g1848_i0 PRJNA529224 1855 154 16.872 25.98288 Metazoa 33208 Rotifera other_Eukaryota 268 1.15e-67   NTclustered gi|1399047|gb|U41281.1|PAU41281 44582 g1848 i0 99.324 96.1558441558442 148 1 96 0 7 154 266 413 Philodina acuticornis 18S rRNA gene blastn 14808 270 0.992592592592593 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina acuticornis
22791604 22791604 PRJNA529224_S_NODE_1878_length_153_cov_45.088710_g1871_i0 PRJNA529224 1878 153 45.08871 68.9857263 Eurotatoria 2816136 Rotifera other_Eukaryota 278 1.9e-70   NTclustered gi|1173728641|gb|KY886364.1| 104777 g1871 i0 100 98.6862745098039 150 0 98 0 3 152 1445 1594 Brachionus calyciflorus isolate AP2 small subunit ribosomal RNA gene, partial sequence blastn 15099 279 0.996415770609319 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus calyciflorus
23450340 23450340 PRJNA529224_S_NODE_1639_length_163_cov_46.208955_g1632_i0 PRJNA529224 1639 163 46.208955 75.32059665 Keratella tropica 885372 Rotifera other_Eukaryota 291 2.64e-74   NTclustered gi|398258127|gb|JN579390.1| 885372 g1632 i0 98.773 99.398773006135 163 2 100 0 1 163 357 519 Keratella tropica isolate T15 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence blastn 16202 291 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Keratella Keratella tropica
24066401 24066401 PRJNA529224_S_NODE_1579_length_167_cov_17.021739_g1572_i0 PRJNA529224 1579 167 17.021739 28.42630413 Metazoa 33208 Rotifera other_Eukaryota 309 7.53e-80   NTclustered gi|146157266|gb|EF485009.1| 96448 g1572 i0 100 5.95808383233533 167 0 100 0 1 167 368 534 Philodina roseola clone Pr_TEL_J telomeric repeat and subterminal DNA junction blastn 995 309 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina roseola
24723995 24723995 PRJNA529224_S_NODE_1220_length_188_cov_17.949686_g1213_i0 PRJNA529224 1220 188 17.949686 33.74540968 Cephalodella gibba 231616 Rotifera other_Eukaryota 270 4.09e-68   NTclustered gi|37788188|gb|AY218141.1| 231616 g1213 i0 93.478 101.117021276596 184 8 96 3 1 180 184 1 Cephalodella gibba 28S ribosomal RNA gene, partial sequence blastn 19010 270 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Notommatidae Cephalodella Cephalodella gibba

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;