RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA529224" and tax_phylum = "Mollusca"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Mollusca · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA529224 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11317684 11317684 PRJNA529224_S_NODE_689_length_238_cov_20.875598_g682_i0 PRJNA529224 689 238 20.875598 49.68392324 Ctena 102298 Mollusca Mollusca 143 1.2299999999999998e-29   NTclustered gi|2129023951|gb|OL361786.1| 2892552 g682 i0 90 9.1344537815126 110 11 46 0 129 238 4050 4159 Ctena cf. galapagana NHMUK 20210086 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 2174 143 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Lucinida Lucinidae Ctena Ctena cf. galapagana NHMUK 20210086
14526901 14526901 PRJNA529224_S_NODE_1772_length_157_cov_21.687500_g1765_i0 PRJNA529224 1772 157 21.6875 34.049375 Physella acuta 109671 Mollusca Mollusca 226 7.209999999999998e-55   NTclustered gi|2572452079|ref|XR_009385380.1| 109671 g1765 i0 95.105 2.40127388535032 143 7 91 0 15 157 3626 3768 PREDICTED: Physella acuta large subunit ribosomal RNA (LOC131933988), rRNA blastn 377 226 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Physidae Physella Physella acuta
19624008 19624008 PRJNA529224_S_NODE_516_length_270_cov_7.136929_g509_i0 PRJNA529224 516 270 7.136929 19.2697083 Dosidicus gigas 346249 Mollusca Mollusca 497 2.6399999999999998e-136   NTclustered gi|1153234029|gb|KY387931.1| 346249 g509 i0 100 94.7 269 0 99 0 2 270 5403 5671 Dosidicus gigas isolate 9110X11 18S ribosomal RNA, complete sequence; and 28S ribosomal RNA, partial sequence blastn 25569 497 1 Eukaryota Opisthokonta Metazoa Mollusca Cephalopoda Oegopsida Ommastrephidae Dosidicus Dosidicus gigas

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;