RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA529224" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA529224 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8150988 8150988 PRJNA529224_S_NODE_1567_length_168_cov_41.812950_g1560_i0 PRJNA529224 1567 168 41.81295 70.245756 Gallus gallus 9031 Chordata Chordata 309 7.58e-80   NTclustered gi|2024360878|ref|XR_005840240.1| 9031 g1560 i0 100 39.6607142857143 167 0 99 0 2 168 689 855 PREDICTED: Gallus gallus 28S ribosomal RNA (LOC121106977), rRNA blastn 6663 309 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Gallus Gallus gallus
9426225 9426225 PRJNA529224_S_NODE_288_length_340_cov_33.755627_g281_i0 PRJNA529224 288 340 33.755627 114.7691318 Gallus gallus 9031 Chordata Chordata 628 1.1699999999999999e-175   NTclustered gi|2201755425|ref|XR_006936394.1| 9031 g281 i0 100 59.9264705882353 340 0 100 0 1 340 1194 855 PREDICTED: Gallus gallus 28S ribosomal RNA (LOC121106977), rRNA blastn 20375 628 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Gallus Gallus gallus
11317661 11317661 PRJNA529224_S_NODE_1449_length_176_cov_26.387755_g1442_i0 PRJNA529224 1449 176 26.387755 46.4424488 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 298 1.73e-76   NTclustered gi|2633801354|ref|XR_009732647.1| 9906 g1442 i0 100 98.8181818181818 161 0 91 0 1 161 963 803 PREDICTED: Bos javanicus 28S ribosomal RNA (LOC133235780), rRNA blastn 17392 298 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos javanicus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;