contig_metadata
13 rows where bioproject = "PRJNA529224", tax_phylum = "Bdellovibrionota" and tax_superkingdom = "Bacteria"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1773159 | 1773159 | PRJNA529224_S_NODE_1182_length_191_cov_27.876543_g1175_i0 | PRJNA529224 | 1182 | 191 | 27.876543 | 53.24419713 | Pseudobdellovibrio sp. HCB154 | 3386277 | Bacteria | Bacteria | 315 | 1.9e-81 | NTclustered | gi|2872995934|gb|CP176530.1| | 3386277 | g1175 | i0 | 96.335 | 218.005235602094 | 191 | 7 | 100 | 0 | 1 | 191 | 701124 | 701314 | Pseudobdellovibrio sp. HCB154 chromosome, complete genome | blastn | 41639 | 315 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Pseudobdellovibrio | Pseudobdellovibrio sp. HCB154 | ||
| 4324927 | 4324927 | PRJNA529224_S_NODE_624_length_247_cov_8.188073_g617_i0 | PRJNA529224 | 624 | 247 | 8.188073 | 20.22454031 | Peredibacter sp. HCB2-198 | 3383025 | Bacteria | Bacteria | 424 | 4.1099999999999996e-114 | NTclustered | gi|2867657404|gb|CP174607.1| | 3383025 | g617 | i0 | 97.571 | 4.69635627530364 | 247 | 6 | 100 | 0 | 1 | 247 | 1293897 | 1293651 | Peredibacter sp. HCB2-198 chromosome, complete genome | blastn | 1160 | 424 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bacteriovoracia | Bacteriovoracales | Bacteriovoracaceae | Peredibacter | Peredibacter sp. HCB2-198 | ||
| 7492557 | 7492557 | PRJNA529224_S_NODE_1606_length_165_cov_10.205882_g1599_i0 | PRJNA529224 | 1606 | 165 | 10.205882 | 16.8397053 | Peredibacter | 263370 | Bacteria | Bacteria | 263 | 5.86e-66 | NTclustered | gi|2631252187|gb|CP139487.1| | 28202 | g1599 | i0 | 95.706 | 52.6909090909091 | 163 | 7 | 99 | 0 | 3 | 165 | 513431 | 513593 | Peredibacter starrii strain A3.12 chromosome, complete genome | blastn | 8694 | 263 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bacteriovoracia | Bacteriovoracales | Bacteriovoracaceae | Peredibacter | Peredibacter starrii | ||
| 9426229 | 9426229 | PRJNA529224_S_NODE_448_length_287_cov_244.775194_g441_i0 | PRJNA529224 | 448 | 287 | 244.775194 | 702.50480678 | Peredibacter sp. HCB2-198 | 3383025 | Bacteria | Bacteria | 425 | 1.36e-114 | NTclustered | gi|2867657404|gb|CP174607.1| | 3383025 | g441 | i0 | 93.426 | 261.306620209059 | 289 | 16 | 100 | 3 | 1 | 287 | 1292323 | 1292610 | Peredibacter sp. HCB2-198 chromosome, complete genome | blastn | 74995 | 425 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bacteriovoracia | Bacteriovoracales | Bacteriovoracaceae | Peredibacter | Peredibacter sp. HCB2-198 | ||
| 10043009 | 10043009 | PRJNA529224_S_NODE_1188_length_190_cov_17.161491_g1181_i0 | PRJNA529224 | 1188 | 190 | 17.161491 | 32.6068329 | Peredibacter | 263370 | Bacteria | Bacteria | 335 | 1.4499999999999993e-87 | NTclustered | gi|2631252187|gb|CP139487.1| | 28202 | g1181 | i0 | 98.429 | 252.042105263158 | 191 | 2 | 100 | 1 | 1 | 190 | 512376 | 512566 | Peredibacter starrii strain A3.12 chromosome, complete genome | blastn | 47888 | 335 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bacteriovoracia | Bacteriovoracales | Bacteriovoracaceae | Peredibacter | Peredibacter starrii | ||
| 15800624 | 15800624 | PRJNA529224_S_NODE_333_length_321_cov_131.527397_g326_i0 | PRJNA529224 | 333 | 321 | 131.527397 | 422.20294437 | Peredibacter starrii | 28202 | Bacteria | Bacteria | 573 | 5.199999999999999e-159 | NTclustered | gi|2631252187|gb|CP139487.1| | 28202 | g326 | i0 | 99.062 | 198.252336448598 | 320 | 1 | 99 | 1 | 1 | 318 | 511771 | 512090 | Peredibacter starrii strain A3.12 chromosome, complete genome | blastn | 63639 | 573 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bacteriovoracia | Bacteriovoracales | Bacteriovoracaceae | Peredibacter | Peredibacter starrii | ||
| 15800630 | 15800630 | PRJNA529224_S_NODE_993_length_207_cov_13.078652_g986_i0 | PRJNA529224 | 993 | 207 | 13.078652 | 27.07280964 | Peredibacter sp. HCB2-198 | 3383025 | Bacteria | Bacteria | 302 | 1.63e-77 | NTclustered | gi|2867657404|gb|CP174607.1| | 3383025 | g986 | i0 | 93.564 | 251.951690821256 | 202 | 13 | 98 | 0 | 6 | 207 | 1293283 | 1293082 | Peredibacter sp. HCB2-198 chromosome, complete genome | blastn | 52154 | 302 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bacteriovoracia | Bacteriovoracales | Bacteriovoracaceae | Peredibacter | Peredibacter sp. HCB2-198 | ||
| 16417235 | 16417235 | PRJNA529224_S_NODE_1593_length_166_cov_8.605839_g1586_i0 | PRJNA529224 | 1593 | 166 | 8.605839 | 14.28569274 | Bacteriovorax | 146784 | Bacteria | Bacteria | 281 | 1.63e-71 | NTclustered | gi|1700689994|gb|CP030035.1| | 960 | g1586 | i0 | 97.561 | 11.6144578313253 | 164 | 4 | 99 | 0 | 2 | 165 | 1661696 | 1661859 | Bacteriovorax stolpii strain AC01 chromosome, complete genome | blastn | 1928 | 281 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bacteriovoracia | Bacteriovoracales | Bacteriovoracaceae | Bacteriovorax | Bacteriovorax stolpii | ||
| 17692346 | 17692346 | PRJNA529224_S_NODE_1674_length_162_cov_4.766917_g1667_i0 | PRJNA529224 | 1674 | 162 | 4.766917 | 7.72240554 | Bacteriovorax | 146784 | Bacteria | Bacteria | 224 | 2.7e-54 | NTclustered | gi|1700689994|gb|CP030035.1| | 960 | g1667 | i0 | 91.875 | 77.4320987654321 | 160 | 13 | 99 | 0 | 1 | 160 | 1660545 | 1660386 | Bacteriovorax stolpii strain AC01 chromosome, complete genome | blastn | 12544 | 224 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bacteriovoracia | Bacteriovoracales | Bacteriovoracaceae | Bacteriovorax | Bacteriovorax stolpii | ||
| 18349504 | 18349504 | PRJNA529224_S_NODE_315_length_330_cov_26.897010_g308_i0 | PRJNA529224 | 315 | 330 | 26.89701 | 88.760133 | Bdellovibrio sp. HCB337 | 3394358 | Bacteria | Bacteria | 399 | 9.629999999999998e-107 | NTclustered | gi|2895525383|gb|CP178621.1| | 3394358 | g308 | i0 | 88.788 | 176.163636363636 | 330 | 32 | 99 | 4 | 3 | 330 | 3447718 | 3447392 | Bdellovibrio sp. HCB337 chromosome, complete genome | blastn | 58134 | 399 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Bdellovibrio | Bdellovibrio sp. HCB337 | ||
| 20900144 | 20900144 | PRJNA529224_S_NODE_657_length_242_cov_10.079812_g650_i0 | PRJNA529224 | 657 | 242 | 10.079812 | 24.39314504 | Bdellovibrio sp. HCB337 | 3394358 | Bacteria | Bacteria | 370 | 5.3e-98 | NTclustered | gi|2895525383|gb|CP178621.1| | 3394358 | g650 | i0 | 94.215 | 79.2231404958678 | 242 | 14 | 100 | 0 | 1 | 242 | 3447065 | 3447306 | Bdellovibrio sp. HCB337 chromosome, complete genome | blastn | 19172 | 370 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Bdellovibrio | Bdellovibrio sp. HCB337 | ||
| 22791608 | 22791608 | PRJNA529224_S_NODE_238_length_358_cov_12.376900_g231_i0 | PRJNA529224 | 238 | 358 | 12.3769 | 44.309302 | Peredibacter | 263370 | Bacteria | Bacteria | 355 | 2.31e-93 | NTclustered | gi|2631252187|gb|CP139487.1| | 28202 | g231 | i0 | 88.966 | 88.9553072625698 | 290 | 29 | 80 | 2 | 12 | 298 | 511006 | 511295 | Peredibacter starrii strain A3.12 chromosome, complete genome | blastn | 31846 | 355 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bacteriovoracia | Bacteriovoracales | Bacteriovoracaceae | Peredibacter | Peredibacter starrii | ||
| 23450347 | 23450347 | PRJNA529224_S_NODE_359_length_311_cov_70.443262_g352_i0 | PRJNA529224 | 359 | 311 | 70.443262 | 219.07854482 | Bdellovibrio sp. HCB337 | 3394358 | Bacteria | Bacteria | 484 | 2.4199999999999994e-132 | NTclustered | gi|2895525383|gb|CP178621.1| | 3394358 | g352 | i0 | 94.855 | 159.318327974277 | 311 | 14 | 99 | 2 | 1 | 309 | 3447408 | 3447718 | Bdellovibrio sp. HCB337 chromosome, complete genome | blastn | 49548 | 484 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Bdellovibrio | Bdellovibrio sp. HCB337 |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;