RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA529224", tax_kingdom = "Bacillati" and tax_phylum = "Armatimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 4 ✖

tax_kingdom 1

  • Bacillati · 4 ✖

bioproject 1

  • PRJNA529224 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5601796 5601796 PRJNA529224_S_NODE_765_length_228_cov_14.532663_g758_i0 PRJNA529224 765 228 14.532663 33.13447164 Armatimonadota bacterium 2033014 Bacteria Bacteria 193 1.15e-44   NTclustered gi|2621703062|emb|OY760504.1| 2033014 g758 i0 84.058 176.605263157895 207 25 89 8 1 203 2410822 2410620 MAG: Armatimonadota bacterium isolate be0b92b7-bbec-405b-9e81-a5dbe9f1ff7a genome assembly, chromosome: 1 blastn 40266 193 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
10701997 10701997 PRJNA529224_S_NODE_1669_length_162_cov_14.661654_g1662_i0 PRJNA529224 1669 162 14.661654 23.75187948 uncultured Armatimonadetes bacterium 157466 Bacteria Bacteria 108 2.84e-19   NTclustered gi|2874254000|emb|OY970325.1| 157466 g1662 i0 85.185 202.956790123457 108 13 66 3 2 108 1304881 1304776 MAG: uncultured Armatimonadetes bacterium isolate MFD05942.bin.1.84 genome assembly, chromosome: 1 blastn 32879 108 1 Bacteria   Bacillati Armatimonadota         uncultured Armatimonadetes bacterium
13251859 13251859 PRJNA529224_S_NODE_31_length_621_cov_82.109797_g26_i0 PRJNA529224 31 621 82.109797 509.90183937 uncultured Armatimonadetes bacterium 157466 Bacteria Bacteria 499 1.83e-136   NTclustered gi|2874254000|emb|OY970325.1| 157466 g26 i0 81.732 339.487922705314 635 83 99 25 2 621 1306471 1305855 MAG: uncultured Armatimonadetes bacterium isolate MFD05942.bin.1.84 genome assembly, chromosome: 1 blastn 210822 499 1 Bacteria   Bacillati Armatimonadota         uncultured Armatimonadetes bacterium
18349491 18349491 PRJNA529224_S_NODE_1315_length_183_cov_230.025974_g1308_i0 PRJNA529224 1315 183 230.025974 420.94753242 Capsulimonas corticalis 2219043 Bacteria Bacteria 241 3.1e-59   NTclustered gi|2240447379|dbj|AP025739.1| 2219043 g1308 i0 91.061 153.453551912568 179 14 98 2 1 179 593743 593567 Capsulimonas corticalis AX-7 DNA, complete genome blastn 28082 241 1 Bacteria   Bacillati Armatimonadota Armatimonadia Capsulimonadales Capsulimonadaceae Capsulimonas Capsulimonas corticalis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;