RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA529224", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA529224 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4324911 4324911 PRJNA529224_S_NODE_1384_length_180_cov_7.284768_g1377_i0 PRJNA529224 1384 180 7.284768 13.1125824 Oscheius guentheri 479154 Nematoda Nematoda 289 1.07e-73   NTclustered gi|158821932|gb|EU195996.1| 479154 g1377 i0 96.045 91.8944444444444 177 7 98 0 4 180 1423 1599 Oscheius guentheri strain SB133 28S ribosomal RNA gene, partial sequence blastn 16541 289 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Oscheius Oscheius guentheri
10043021 10043021 PRJNA529224_S_NODE_1708_length_160_cov_6.160305_g1701_i0 PRJNA529224 1708 160 6.160305 9.856488 Poikilolaimus 96658 Nematoda Nematoda 152 1.2699999999999998e-32   NTclustered gi|158821920|gb|EU195984.1| 96659 g1701 i0 90.598 55.96875 117 7 72 4 39 153 2329 2215 Poikilolaimus oxycercus strain SB200 28S ribosomal RNA gene, partial sequence blastn 8955 152 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Poikilolaimus Poikilolaimus oxycercus
20240951 20240951 PRJNA529224_S_NODE_1216_length_188_cov_96.383648_g1209_i0 PRJNA529224 1216 188 96.383648 181.20125824 Plectus 49353 Nematoda Nematoda 281 1.89e-71   NTclustered gi|90968514|emb|AJ966508.1| 344397 g1209 i0 99.355 78.1542553191489 155 1 82 0 31 185 1 155 Plectidae sp. PDL-2005 partial 18S rRNA gene, isolated in Belgium, Ghent blastn 14693 283 0.992932862190813 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Plectida Plectidae   Plectidae sp. PDL-2005

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;