RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA527965" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA527965 · 6 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
496896 496896 PRJNA527965_S_NODE_3281_length_210_cov_7.154286_g3198_i0 PRJNA527965 3281 210 7.154286 15.0240006 Setostephanolaimus sp. OVN-2021 2893399 Nematoda Nematoda 231 2.2099999999999997e-56   NTclustered gi|2130729779|gb|OL416399.1| 2893399 g3198 i0 90.449 72.4380952380952 178 14 83 3 36 210 2218 2395 Setostephanolaimus sp. OVN-2021 large subunit ribosomal RNA gene, partial sequence blastn 15212 231 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Plectida Camacolaimidae Setostephanolaimus Setostephanolaimus sp. OVN-2021
6217851 6217851 PRJNA527965_S_NODE_4685_length_173_cov_2.188406_g4602_i0 PRJNA527965 4685 173 2.188406 3.78594238 Eumonhystera 288545 Nematoda Nematoda 320 3.61e-83   NTclustered gi|57833964|emb|AJ875122.1| 554024 g4602 i0 100 100.063583815029 173 0 100 0 1 173 259 87 Uncultured nematode partial 18S rRNA gene, clone SType 5 blastn 17311 320 1 Eukaryota Opisthokonta Metazoa Nematoda         Nematoda environmental sample
7492366 7492366 PRJNA527965_S_NODE_2306_length_254_cov_3.780822_g2223_i0 PRJNA527965 2306 254 3.780822 9.60328788 Chromadorida 70242 Nematoda Nematoda 294 3.47e-75   NTclustered gi|2130729776|gb|OL416396.1| 73922 g2223 i0 87.795 100.704724409449 254 28 99 3 1 252 1799 2051 Paracanthonchus caecus isolate Pc-OVN-2021 large subunit ribosomal RNA gene, partial sequence blastn 25579 296 0.993243243243243 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Chromadorida Cyatholaimidae Paracanthonchus Paracanthonchus caecus
15799518 15799518 PRJNA527965_S_NODE_3093_length_216_cov_3.524862_g3010_i0 PRJNA527965 3093 216 3.524862 7.61370192 Chromadoropsis vivipara 73933 Nematoda Nematoda 265 2.25e-66   NTclustered gi|2063683635|gb|MZ504149.1| 73933 g3010 i0 89.041 113.837962962963 219 17 100 5 1 216 2719 2933 Chromadoropsis vivipara isolate C-Mv internal transcribed spacer 2 and large subunit ribosomal RNA gene, partial sequence blastn 24589 265 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Chromadorida Chromadoridae Chromadoropsis Chromadoropsis vivipara
17074225 17074225 PRJNA527965_S_NODE_5794_length_155_cov_3.575000_g5711_i0 PRJNA527965 5794 155 3.575 5.54125 Chromadoropsis vivipara 73933 Nematoda Nematoda 122 9.58e-24   NTclustered gi|2063683635|gb|MZ504149.1| 73933 g5711 i0 96 11.9935483870968 75 3 48 0 1 75 3662 3588 Chromadoropsis vivipara isolate C-Mv internal transcribed spacer 2 and large subunit ribosomal RNA gene, partial sequence blastn 1859 122 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Chromadorida Chromadoridae Chromadoropsis Chromadoropsis vivipara
24722942 24722942 PRJNA527965_S_NODE_4540_length_176_cov_9.716312_g4457_i0 PRJNA527965 4540 176 9.716312 17.10070912 Nematoda environmental sample 554024 Nematoda Nematoda 326 7.92e-85   NTclustered gi|57833964|emb|AJ875122.1| 554024 g4457 i0 100 83.7727272727273 176 0 100 0 1 176 910 1085 Uncultured nematode partial 18S rRNA gene, clone SType 5 blastn 14744 326 1 Eukaryota Opisthokonta Metazoa Nematoda         Nematoda environmental sample

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;