RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA527965", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 6 ✖

tax_kingdom 1

  • Pseudomonadati · 6 ✖

bioproject 1

  • PRJNA527965 · 6 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1114275 1114275 PRJNA527965_S_NODE_3221_length_212_cov_12.152542_g3138_i0 PRJNA527965 3221 212 12.152542 25.76338904 Pseudomonadati 3379134 Bacteria Bacteria 370 4.53e-98   NTclustered gi|1898123824|gb|CP060693.1| 28198 g3138 i0 98.565 242.481132075472 209 3 100 0 4 212 67891 67683 Aliarcobacter cryaerophilus strain 16CS1285-4 chromosome, complete genome blastn 51406 370 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter cryaerophilus
6217875 6217875 PRJNA527965_S_NODE_745_length_410_cov_140.594667_g662_i0 PRJNA527965 745 410 140.594667 576.4381347 Aliarcobacter 2321111 Bacteria Bacteria 643 5.109999999999998e-180   NTclustered gi|1817415263|gb|CP026655.1| 28198 g662 i0 98.889 203.258536585366 360 4 88 0 51 410 59028 59387 Aliarcobacter cryaerophilus strain G13RTA chromosome, complete genome blastn 83336 643 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter cryaerophilus
15142440 15142440 PRJNA527965_S_NODE_92_length_899_cov_94.814815_g56_i0 PRJNA527965 92 899 94.814815 852.38518685 Arcobacteraceae 2808963 Bacteria Bacteria 1572 0   NTclustered gi|290877933|emb|FN600699.1| 28198 g56 i0 98.22 400.460511679644 899 16 100 0 1 899 1785 887 Arcobacter cryaerophilus partial 23S rRNA gene, strain LMG 9865, biovar 1A blastn 360014 1572 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter cryaerophilus
19622928 19622928 PRJNA527965_S_NODE_4176_length_185_cov_2.666667_g4093_i0 PRJNA527965 4176 185 2.666667 4.93333395 Sulfurospirillum sp. 1612 3094835 Bacteria Bacteria 158 3.25e-34   NTclustered gi|2674554435|gb|CP140614.1| 3094835 g4093 i0 86.207 261.243243243243 145 20 78 0 12 156 1767253 1767397 Sulfurospirillum sp. 1612 chromosome, complete genome blastn 48330 158 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurospirillaceae Sulfurospirillum Sulfurospirillum sp. 1612
22791457 22791457 PRJNA527965_S_NODE_618_length_447_cov_16.070388_g536_i0 PRJNA527965 618 447 16.070388 71.83463436 Arcobacteraceae 2808963 Bacteria Bacteria 802 0   NTclustered gi|1474790806|gb|CP032100.1| 663365 g536 i0 99.103 415.630872483221 446 4 99 0 1 446 1734766 1734321 Arcobacter suis CECT 7833 chromosome, complete genome blastn 185787 802 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter Arcobacter suis
25340646 25340646 PRJNA527965_S_NODE_1340_length_328_cov_36.000000_g1257_i0 PRJNA527965 1340 328 36 118.08 Arcobacteraceae 2808963 Bacteria Bacteria 595 1.1399999999999998e-165   NTclustered gi|1474790806|gb|CP032100.1| 663365 g1257 i0 99.39 384.94512195122 328 2 100 0 1 328 1733994 1733667 Arcobacter suis CECT 7833 chromosome, complete genome blastn 126262 595 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter Arcobacter suis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;