RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA527965", tax_kingdom = "Fungi" and tax_phylum = "Mucoromycota"

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tax_superkingdom 1

tax_phylum 1

  • Mucoromycota · 2 ✖

tax_kingdom 1

  • Fungi · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA527965 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13250749 13250749 PRJNA527965_S_NODE_3851_length_194_cov_3.289308_g3768_i0 PRJNA527965 3851 194 3.289308 6.38125752 Lichtheimia corymbifera 42458 Fungi Fungi 187 4.4e-43   NTclustered gi|225131089|gb|FJ345350.1| 42458 g3768 i0 87.195 87.701030927835 164 21 85 0 31 194 3386 3223 Mycocladus corymbiferus strain ATCC 14058 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 17014 187 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Lichtheimiaceae Lichtheimia Lichtheimia corymbifera
23449285 23449285 PRJNA527965_S_NODE_4779_length_171_cov_3.500000_g4696_i0 PRJNA527965 4779 171 3.5 5.985 Cokeromyces recurvatus 90255 Fungi Fungi 135 1.3800000000000002e-27   NTclustered gi|82398548|gb|DQ273812.1| 90255 g4696 i0 81.503 60.1578947368421 173 25 100 4 1 171 1576 1409 Cokeromyces recurvatus isolate AFTOL-ID 627 28S ribosomal RNA gene, partial sequence blastn 10287 135 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Mucoraceae Cokeromyces Cokeromyces recurvatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;