RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where bioproject = "PRJNA527965", tax_clade = "Sar" and tax_phylum = "Oomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 8 ✖

tax_clade 1

bioproject 1

  • PRJNA527965 · 8 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
496938 496938 PRJNA527965_S_NODE_5061_length_166_cov_5.312977_g4978_i0 PRJNA527965 5061 166 5.312977 8.81954182 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 191 2.82e-44   NTclustered gi|813199067|ref|XR_001099866.1| 695850 g4978 i0 90.476 34.6024096385542 147 10 87 4 6 150 1520 1664 Saprolegnia parasitica CBS 223.65 28S ribosomal RNA rRNA blastn 5744 191 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
6874556 6874556 PRJNA527965_S_NODE_4006_length_189_cov_9.032468_g3923_i0 PRJNA527965 4006 189 9.032468 17.07136452 Pythium monospermum 92964 SAR_Eukaryotes SAR_Eukaryotes 316 5.21e-82   NTclustered gi|33520250|gb|AY273995.1| 92964 g3923 i0 96.825 94.1904761904762 189 6 100 0 1 189 230 42 Pythium monospermum large subunit ribosomal RNA gene, partial sequence blastn 17802 316 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium monospermum
6874570 6874570 PRJNA527965_S_NODE_4646_length_174_cov_1.884892_g4563_i0 PRJNA527965 4646 174 1.884892 3.27971208 Pseudoperonospora cubensis 143453 SAR_Eukaryotes SAR_Eukaryotes 60.2 8.75e-5   NTclustered gi|927372602|ref|NC_027859.1| 143453 g4563 i0 78.947 0.724137931034483 95 14 52 4 14 103 5727 5820 Pseudoperonospora cubensis mitochondrion, complete genome blastn 126 60.2 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Pseudoperonospora Pseudoperonospora cubensis
8149872 8149872 PRJNA527965_S_NODE_3427_length_205_cov_3.170588_g3344_i0 PRJNA527965 3427 205 3.170588 6.4997054 Pythium monospermum 92964 SAR_Eukaryotes SAR_Eukaryotes 357 3.3899999999999996e-94   NTclustered gi|33520250|gb|AY273995.1| 92964 g3344 i0 98.049 101.785365853659 205 4 100 0 1 205 488 692 Pythium monospermum large subunit ribosomal RNA gene, partial sequence blastn 20866 357 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium monospermum
10700898 10700898 PRJNA527965_S_NODE_5129_length_165_cov_7.707692_g5046_i0 PRJNA527965 5129 165 7.707692 12.7176918 Globisporangium ultimum 2052682 SAR_Eukaryotes SAR_Eukaryotes 228 2.139999999999999e-55   NTclustered gi|161727445|dbj|AB370101.1| 2052682 g5046 i0 91.617 30.0242424242424 167 11 100 2 1 165 196 31 Pythium ultimum genes for 28S rRNA, intergenic spacer, 18S rRNA, partial and complete sequence, strain: UZ085-11 blastn 4954 228 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium ultimum
19622935 19622935 PRJNA527965_S_NODE_4616_length_175_cov_1.464286_g4533_i0 PRJNA527965 4616 175 1.464286 2.5625005 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 169 1.4e-37   NTclustered gi|325194632|emb|FR825445.1| 890382 g4533 i0 84.091 99.0457142857143 176 27 100 1 1 175 440 615 Albugo laibachii Nc14, genomic contig CONTIG_2284_NC14_v4_911_15847 blastn 17333 169 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
20898969 20898969 PRJNA527965_S_NODE_1357_length_326_cov_9.642612_g1274_i0 PRJNA527965 1357 326 9.642612 31.43491512 Aphanomyces brasiliensis 2525538 SAR_Eukaryotes SAR_Eukaryotes 575 1.4699999999999996e-159   NTclustered gi|2098511708|gb|OK235679.1| 2525538 g1274 i0 98.466 98.8006134969325 326 5 100 0 1 326 918 593 Aphanomyces brasiliensis voucher CCIBt4545 small subunit ribosomal RNA gene, partial sequence blastn 32209 575 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces brasiliensis
20899064 20899064 PRJNA527965_S_NODE_657_length_432_cov_2.801008_g575_i0 PRJNA527965 657 432 2.801008 12.10035456 Paralagenidium karlingii 1440115 SAR_Eukaryotes SAR_Eukaryotes 141 8.65e-29   NTclustered gi|2554484921|ref|NC_080886.1| 1440115 g575 i0 90.09 24.6342592592593 111 8 25 3 300 409 41764 41656 Paralagenidium karlingii isolate 19-09020 mitochondrion, complete genome blastn 10642 141 1 Eukaryota Sar   Oomycota Peronosporomycetes     Paralagenidium Paralagenidium karlingii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;