RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA527965", tax_clade = "Sar" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA527965 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1114259 1114259 PRJNA527965_S_NODE_2161_length_263_cov_57.640351_g2078_i0 PRJNA527965 2161 263 57.640351 151.59412313 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 399 7.439999999999999e-107   NTclustered gi|2866450392|gb|PQ722881.1| 35084 g2078 i0 94.922 97.3079847908745 256 11 97 2 9 263 1274 1528 Babesia sp. isolate YN-4 WX-T-165 small subunit ribosomal RNA gene, partial sequence blastn 25592 403 0.990074441687345 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia sp.
3047924 3047924 PRJNA527965_S_NODE_5803_length_155_cov_2.541667_g5720_i0 PRJNA527965 5803 155 2.541667 3.93958385 Eimeria anguillae 947528 SAR_Eukaryotes SAR_Eukaryotes 206 9.24e-49   NTclustered gi|324022087|gb|GU593704.1| 947528 g5720 i0 94.697 85.8967741935484 132 7 85 0 2 133 1358 1227 Eimeria anguillae strain 128 28S ribosomal RNA gene, partial sequence blastn 13314 206 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria anguillae
10042869 10042869 PRJNA527965_S_NODE_588_length_453_cov_71.239234_g506_i0 PRJNA527965 588 453 71.239234 322.71373002 Apicomplexa 5794 SAR_Eukaryotes SAR_Eukaryotes 778 0   NTclustered gi|1617862800|gb|MK796081.1| 90962 g506 i0 97.788 99.8013245033113 452 9 99 1 1 451 387 838 Cryptosporidium sp. isolate 8 small subunit ribosomal RNA gene, partial sequence blastn 45210 784 0.99234693877551 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium sp.
20899034 20899034 PRJNA527965_S_NODE_497_length_476_cov_8.800454_g415_i0 PRJNA527965 497 476 8.800454 41.89016104 Cyclospora cayetanensis 88456 SAR_Eukaryotes SAR_Eukaryotes 126 2.6899999999999994e-24   NTclustered gi|160358922|gb|EU252544.1| 88456 g415 i0 89.216 18.155462184874 102 10 21 1 10 111 42 142 Cyclospora cayetanensis 28S large subunit ribosomal RNA gene, partial sequence blastn 8642 126 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Cyclospora Cyclospora cayetanensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;