RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA527965", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 7 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 7 ✖

bioproject 1

  • PRJNA527965 · 7 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3047851 3047851 PRJNA527965_S_NODE_2203_length_261_cov_3.234513_g2120_i0 PRJNA527965 2203 261 3.234513 8.44207893 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 311 3.56e-80   NTclustered gi|2874253811|emb|OY969795.1| 464461 g2120 i0 88.462 55.0229885057471 260 26 99 4 1 258 653984 653727 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 14361 311 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium
7492387 7492387 PRJNA527965_S_NODE_426_length_504_cov_3.524520_g345_i0 PRJNA527965 426 504 3.52452 17.7635808 Parachlamydia 83551 Bacteria Bacteria 784 0   NTclustered gi|470491594|ref|NR_077046.1| 83552 g345 i0 94.664 113.759920634921 506 25 100 2 1 504 811 1316 Parachlamydia acanthamoebae strain UV-7 23S ribosomal RNA gene, complete sequence blastn 57335 784 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia acanthamoebae
9425111 9425111 PRJNA527965_S_NODE_2988_length_221_cov_2.075269_g2905_i0 PRJNA527965 2988 221 2.075269 4.58634449 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 270 4.969999999999999e-68   NTclustered gi|2874253811|emb|OY969795.1| 464461 g2905 i0 88.739 104.633484162896 222 24 100 1 1 221 655133 655354 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 23124 270 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium
16417066 16417066 PRJNA527965_S_NODE_4013_length_189_cov_3.012987_g3930_i0 PRJNA527965 4013 189 3.012987 5.69454543 Parachlamydiaceae 92713 Bacteria Bacteria 294 2.44e-75   NTclustered gi|470491594|ref|NR_077046.1| 83552 g3930 i0 95.187 175.015873015873 187 8 98 1 1 186 2713 2899 Parachlamydia acanthamoebae strain UV-7 23S ribosomal RNA gene, complete sequence blastn 33078 294 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia acanthamoebae
20240808 20240808 PRJNA527965_S_NODE_5336_length_162_cov_2.125984_g5253_i0 PRJNA527965 5336 162 2.125984 3.44409408 Chlamydiia 204429 Bacteria Bacteria 265 1.5899999999999998e-66   NTclustered gi|18029193|gb|AF364564.1| 174324 g5253 i0 96.835 108.382716049383 158 5 98 0 5 162 388 231 Uncultured Chlamydiales bacterium clone P-4 16S ribosomal RNA gene, partial sequence blastn 17558 265 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     uncultured Chlamydiales bacterium
22173693 22173693 PRJNA527965_S_NODE_4958_length_168_cov_1.827068_g4875_i0 PRJNA527965 4958 168 1.827068 3.06947424 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 255 1e-63   NTclustered gi|2874253811|emb|OY969795.1| 464461 g4875 i0 94.048 139.136904761905 168 10 100 0 1 168 654838 654671 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 23375 255 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium
24066245 24066245 PRJNA527965_S_NODE_5579_length_158_cov_3.821138_g5496_i0 PRJNA527965 5579 158 3.821138 6.03739804 Parachlamydia 83551 Bacteria Bacteria 167 4.47e-37   NTclustered gi|470491594|ref|NR_077046.1| 83552 g5496 i0 86.364 148.594936708861 154 20 97 1 1 154 392 240 Parachlamydia acanthamoebae strain UV-7 23S ribosomal RNA gene, complete sequence blastn 23478 167 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia acanthamoebae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;