RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA527965", tax_clade = "Opisthokonta" and tax_phylum = "Microsporidia"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Microsporidia · 2 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 2 ✖

bioproject 1

  • PRJNA527965 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8149901 8149901 PRJNA527965_S_NODE_5207_length_164_cov_1.511628_g5124_i0 PRJNA527965 5207 164 1.511628 2.47906992 Andreanna caspii 549444 Fungi Fungi 86.1 1.35e-12   NTclustered gi|194474455|gb|EU664450.1| 549444 g5124 i0 81.481 13.8475609756098 108 16 66 2 57 164 313 210 Andreanna caspii small subunit ribosomal RNA gene, partial sequence blastn 2271 86.1 1 Eukaryota Opisthokonta Fungi Microsporidia     Amblyosporidae Andreanna Andreanna caspii
11975711 11975711 PRJNA527965_S_NODE_970_length_371_cov_4.440476_g887_i0 PRJNA527965 970 371 4.440476 16.47416596 Heterosporis sp. NBDP-2013a 1289055 Fungi Fungi 100 1.24e-16   NTclustered gi|448278458|gb|KC137554.1| 1289055 g887 i0 83.036 0.30188679245283 112 18 30 1 143 254 2852 2962 Heterosporis sp. NBDP-2013a isolate MN/CISCO small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 112 100 1 Eukaryota Opisthokonta Fungi Microsporidia     Pleistophoridae Heterosporis Heterosporis sp. NBDP-2013a

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;