RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

11 rows where bioproject = "PRJNA527965" and tax_clade = "Metamonada"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Metamonada · 11 ✖

bioproject 1

  • PRJNA527965 · 11 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1114298 1114298 PRJNA527965_S_NODE_5081_length_166_cov_2.419847_g4998_i0 PRJNA527965 5081 166 2.419847 4.01694602 Trepomonas 44997 Fornicata other_Eukaryota 302 1.2500000000000001e-77   NTclustered gi|2592099212|gb|OR670395.1| 460177 g4998 i0 99.398 62.0060240963855 166 1 100 0 1 166 42 207 Trepomonas sp. PPS6 isolate Chat small subunit ribosomal RNA gene, partial sequence blastn 10293 302 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Trepomonas Trepomonas sp. PPS6
3665600 3665600 PRJNA527965_S_NODE_543_length_465_cov_3.046512_g461_i0 PRJNA527965 543 465 3.046512 14.1662808 Hexamita 13567 Fornicata other_Eukaryota 859 0   NTclustered gi|2592099234|gb|OR670417.1| 28002 g461 i0 100 98.7956989247312 465 0 100 0 1 465 531 995 Hexamita inflata isolate CZ002 small subunit ribosomal RNA gene, partial sequence blastn 45940 859 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Hexamita Hexamita inflata
4323821 4323821 PRJNA527965_S_NODE_3784_length_196_cov_1.229814_g3701_i0 PRJNA527965 3784 196 1.229814 2.41043544 Hexamita inflata 28002 Fornicata other_Eukaryota 313 7.04e-81   NTclustered gi|2592099185|gb|OR670381.1| 28002 g3701 i0 96.316 40.5816326530612 190 7 97 0 2 191 271 82 Hexamita inflata isolate SM small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence blastn 7954 313 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Hexamita Hexamita inflata
5600691 5600691 PRJNA527965_S_NODE_2205_length_261_cov_2.429204_g2122_i0 PRJNA527965 2205 261 2.429204 6.34022244 Hexamita inflata 28002 Fornicata other_Eukaryota 141 4.9399999999999993e-29   NTclustered gi|459348792|gb|KC249997.1| 28002 g2122 i0 88.696 17.5095785440613 115 13 44 0 147 261 1692 1806 Hexamita inflata 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence blastn 4570 141 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Hexamita Hexamita inflata
9425179 9425179 PRJNA527965_S_NODE_6268_length_150_cov_2.043478_g6185_i0 PRJNA527965 6268 150 2.043478 3.065217 Hexamita inflata 28002 Fornicata other_Eukaryota 126 7.1e-25   NTclustered gi|459348792|gb|KC249997.1| 28002 g6185 i0 88.571 0.7 105 11 70 1 46 150 1531 1428 Hexamita inflata 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence blastn 105 126 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Hexamita Hexamita inflata
12593285 12593285 PRJNA527965_S_NODE_3050_length_218_cov_3.180328_g2967_i0 PRJNA527965 3050 218 3.180328 6.93311504 Trepomonas 44997 Fornicata other_Eukaryota 233 6.409999999999999e-57   NTclustered gi|2592099216|gb|OR670399.1| 460177 g2967 i0 86.239 84.8532110091743 218 27 99 3 3 218 679 463 Trepomonas sp. PPS6 isolate NO666 small subunit ribosomal RNA gene, partial sequence blastn 18498 233 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Trepomonas Trepomonas sp. PPS6
13250724 13250724 PRJNA527965_S_NODE_2791_length_229_cov_2.268041_g2708_i0 PRJNA527965 2791 229 2.268041 5.19381389 Hexamita inflata 28002 Fornicata other_Eukaryota 329 8.43e-86   NTclustered gi|459348792|gb|KC249997.1| 28002 g2708 i0 93.665 0.965065502183406 221 12 96 2 1 220 1691 1910 Hexamita inflata 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence blastn 221 329 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Hexamita Hexamita inflata
13250769 13250769 PRJNA527965_S_NODE_4891_length_169_cov_1.843284_g4808_i0 PRJNA527965 4891 169 1.843284 3.11514996 Hexamita inflata 28002 Fornicata other_Eukaryota 196 6.16e-46   NTclustered gi|459348792|gb|KC249997.1| 28002 g4808 i0 93.233 0.78698224852071 133 9 79 0 37 169 1057 1189 Hexamita inflata 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence blastn 133 196 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Hexamita Hexamita inflata
16417050 16417050 PRJNA527965_S_NODE_2513_length_243_cov_3.418269_g2430_i0 PRJNA527965 2513 243 3.418269 8.30639367 Hexamita 13567 Fornicata other_Eukaryota 379 8.849999999999998e-101   NTclustered gi|2592099185|gb|OR670381.1| 28002 g2430 i0 95.745 83.0905349794239 235 10 97 0 9 243 243 477 Hexamita inflata isolate SM small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence blastn 20191 379 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Hexamita Hexamita inflata
22173654 22173654 PRJNA527965_S_NODE_2918_length_224_cov_1.772487_g2835_i0 PRJNA527965 2918 224 1.772487 3.97037088 Hexamita inflata 28002 Fornicata other_Eukaryota 409 1.03e-109   NTclustered gi|459348792|gb|KC249997.1| 28002 g2835 i0 99.554 12.1160714285714 224 1 100 0 1 224 341 564 Hexamita inflata 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence blastn 2714 409 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Hexamita Hexamita inflata
22173666 22173666 PRJNA527965_S_NODE_3478_length_204_cov_1.733728_g3395_i0 PRJNA527965 3478 204 1.733728 3.53680512 Hexamita inflata 28002 Fornicata other_Eukaryota 185 1.6799999999999994e-42   NTclustered gi|459348792|gb|KC249997.1| 28002 g3395 i0 86.747 11.1225490196078 166 22 81 0 20 185 359 194 Hexamita inflata 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence blastn 2269 185 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Hexamita Hexamita inflata

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;