RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA527965" and tax_clade = "Haptista"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 3 ✖

bioproject 1

  • PRJNA527965 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4942555 4942555 PRJNA527965_S_NODE_3184_length_213_cov_3.764045_g3101_i0 PRJNA527965 3184 213 3.764045 8.01741585 Pterocystida 2607628 Root_unresolved Root_unresolved 322 1.29e-83   NTclustered gi|61187375|gb|AY752993.1| 299886 g3101 i0 93.925 100.422535211268 214 11 100 2 1 213 2416 2204 Pterocystis tropica 28S ribosomal RNA gene, partial sequence blastn 21390 322 1 Eukaryota Haptista     Centroplasthelida Pterocystida Pterocystidae Pterocystis Pterocystis tropica
5600749 5600749 PRJNA527965_S_NODE_5245_length_163_cov_3.773438_g5162_i0 PRJNA527965 5245 163 3.773438 6.15070394 Phaeocystis sp. 1907791 Haptophyta other_Eukaryota 207 2.74e-49   NTclustered gi|2059554211|gb|MZ469752.1| 1907791 g5162 i0 89.571 5.5521472392638 163 17 100 0 1 163 312 150 Phaeocystis sp. strain DAD-ALGEUK-24 large subunit ribosomal RNA gene, partial sequence; chloroplast blastn 905 207 1 Eukaryota Haptista   Haptophyta   Phaeocystales Phaeocystaceae Phaeocystis Phaeocystis sp.
8149880 8149880 PRJNA527965_S_NODE_3907_length_192_cov_3.535032_g3824_i0 PRJNA527965 3907 192 3.535032 6.78726144 Pterocystis tropica 299886 Root_unresolved Root_unresolved 292 8.95e-75   NTclustered gi|61187375|gb|AY752993.1| 299886 g3824 i0 95.161 78.8177083333333 186 8 96 1 1 185 2029 2214 Pterocystis tropica 28S ribosomal RNA gene, partial sequence blastn 15133 292 1 Eukaryota Haptista     Centroplasthelida Pterocystida Pterocystidae Pterocystis Pterocystis tropica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;