RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA527965", tax_clade = "CRuMs" and tax_superkingdom = "Eukaryota"

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tax_superkingdom 1

  • Eukaryota · 6 ✖

tax_clade 1

  • CRuMs · 6 ✖

bioproject 1

  • PRJNA527965 · 6 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9425099 9425099 PRJNA527965_S_NODE_2568_length_240_cov_2.141463_g2485_i0 PRJNA527965 2568 240 2.141463 5.1395112 Micronuclearia podoventralis 238746 Root_unresolved Root_unresolved 433 6.599999999999997e-117   NTclustered gi|300078503|gb|GU001165.1| 238746 g2485 i0 99.167 32.075 240 2 100 0 1 240 1338 1577 Micronuclearia podoventralis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 7698 433 1 Eukaryota CRuMs       Rigifilida   Micronuclearia Micronuclearia podoventralis
18348419 18348419 PRJNA527965_S_NODE_3595_length_201_cov_2.421687_g3512_i0 PRJNA527965 3595 201 2.421687 4.86759087 Micronuclearia podoventralis 238746 Root_unresolved Root_unresolved 267 5.73e-67   NTclustered gi|300078503|gb|GU001165.1| 238746 g3512 i0 90.385 60.0696517412935 208 12 100 4 1 201 1927 1721 Micronuclearia podoventralis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 12074 267 1 Eukaryota CRuMs       Rigifilida   Micronuclearia Micronuclearia podoventralis
20899036 20899036 PRJNA527965_S_NODE_5017_length_167_cov_2.045455_g4934_i0 PRJNA527965 5017 167 2.045455 3.41590985 Micronuclearia podoventralis 238746 Root_unresolved Root_unresolved 135 1.35e-27   NTclustered gi|300078503|gb|GU001165.1| 238746 g4934 i0 83.007 63.2035928143713 153 22 89 3 1 149 1307 1155 Micronuclearia podoventralis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 10555 135 1 Eukaryota CRuMs       Rigifilida   Micronuclearia Micronuclearia podoventralis
20899038 20899038 PRJNA527965_S_NODE_5077_length_166_cov_2.618321_g4994_i0 PRJNA527965 5077 166 2.618321 4.34641286 Micronuclearia podoventralis 238746 Root_unresolved Root_unresolved 281 1.63e-71   NTclustered gi|300078503|gb|GU001165.1| 238746 g4994 i0 97.561 30.3253012048193 164 4 99 0 3 166 3077 3240 Micronuclearia podoventralis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 5034 281 1 Eukaryota CRuMs       Rigifilida   Micronuclearia Micronuclearia podoventralis
20899041 20899041 PRJNA527965_S_NODE_5197_length_164_cov_1.930233_g5114_i0 PRJNA527965 5197 164 1.930233 3.16558212 Micronuclearia podoventralis 238746 Root_unresolved Root_unresolved 268 1.25e-67   NTclustered gi|33641921|gb|AY268038.1| 238746 g5114 i0 96.341 75.6341463414634 164 5 100 1 1 164 328 166 Micronuclearia podoventralis small subunit ribosomal RNA gene, partial sequence blastn 12404 268 1 Eukaryota CRuMs       Rigifilida   Micronuclearia Micronuclearia podoventralis
24722964 24722964 PRJNA527965_S_NODE_5680_length_157_cov_1.737705_g5597_i0 PRJNA527965 5680 157 1.737705 2.72819685 Micronuclearia podoventralis 238746 Root_unresolved Root_unresolved 279 5.46e-71   NTclustered gi|300078503|gb|GU001165.1| 238746 g5597 i0 98.726 3.22929936305732 157 2 100 0 1 157 1147 1303 Micronuclearia podoventralis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 507 279 1 Eukaryota CRuMs       Rigifilida   Micronuclearia Micronuclearia podoventralis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;