RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA527965", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Altimarinota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Candidatus Altimarinota · 3 ✖

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA527965 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5600694 5600694 PRJNA527965_S_NODE_245_length_629_cov_42.658249_g178_i0 PRJNA527965 245 629 42.658249 268.32038621 Candidatus Gracilibacteria bacterium HOT-871 1540872 Bacteria Bacteria 830 0   NTclustered gi|1275383184|gb|CP017714.1| 1540872 g178 i0 90.59 323.81240063593 627 58 99 1 1 627 892407 891782 Candidatus Gracilibacteria bacterium HOT-871, complete genome blastn 203678 830 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium HOT-871
13250691 13250691 PRJNA527965_S_NODE_111_length_849_cov_15.637592_g70_i0 PRJNA527965 111 849 15.637592 132.76315608 Candidatus Gracilibacteria bacterium 28_42_T64 1862133 Bacteria Bacteria 749 0   NTclustered gi|1769783243|gb|CP042461.1| 1862133 g70 i0 82.986 51.8138987043581 864 111 100 32 1 849 1250203 1251045 Candidatus Gracilibacteria bacterium 28_42_T64 chromosome, complete genome blastn 43990 749 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium 28_42_T64
15799514 15799514 PRJNA527965_S_NODE_2973_length_221_cov_4.543011_g2890_i0 PRJNA527965 2973 221 4.543011 10.04005431 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 76.3 4.38e-14   NR MDD2745034.1 2044595 g2890 i0 63 0.990950226244344 73 21 99.1 2 1 219 307 373 MDD2745034.1 S-layer homology domain-containing protein [Candidatus Altimarinota bacterium] diamond 219 76.3 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;