RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

9 rows where bioproject = "PRJNA527965" and tax_clade = "Bacteria candidate phyla"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 9 ✖

bioproject 1

  • PRJNA527965 · 9 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
496959 496959 PRJNA527965_S_NODE_681_length_426_cov_3.547315_g599_i0 PRJNA527965 681 426 3.547315 15.1115619 Candidatus Peribacteria bacterium 2053688 Bacteria Bacteria 580 4.239999999999999e-161   NTclustered gi|2258833497|gb|CP060226.1| 2053688 g599 i0 91.315 578.781690140845 426 36 100 1 1 426 814408 813984 MAG: Candidatus Peribacteria bacterium isolate HK-STAS-PATE-10 chromosome, complete genome blastn 246561 580 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota Candidatus Peribacteria       Candidatus Peribacteria bacterium
5600694 5600694 PRJNA527965_S_NODE_245_length_629_cov_42.658249_g178_i0 PRJNA527965 245 629 42.658249 268.32038621 Candidatus Gracilibacteria bacterium HOT-871 1540872 Bacteria Bacteria 830 0   NTclustered gi|1275383184|gb|CP017714.1| 1540872 g178 i0 90.59 323.81240063593 627 58 99 1 1 627 892407 891782 Candidatus Gracilibacteria bacterium HOT-871, complete genome blastn 203678 830 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium HOT-871
8149913 8149913 PRJNA527965_S_NODE_5567_length_159_cov_0.943548_g5484_i0 PRJNA527965 5567 159 0.943548 1.50024132 Candidatus Chromulinivorax destructor 2066483 Bacteria Bacteria 267 4.3199999999999996e-67   NTclustered gi|1443103054|gb|CP025544.1| 2066483 g5484 i0 96.855 10.062893081761 159 5 100 0 1 159 663241 663083 Candidatus Chromulinivorax destructor strain SeV1 chromosome, complete genome blastn 1600 267 1 Bacteria Bacteria candidate phyla     Candidatus Babeliae Candidatus Babeliales Candidatus Chromulinivoraceae Candidatus Chromulinivorax Candidatus Chromulinivorax destructor
10700821 10700821 PRJNA527965_S_NODE_1389_length_323_cov_2.604167_g1306_i0 PRJNA527965 1389 323 2.604167 8.41145941 Candidatus Peribacteria bacterium 2053688 Bacteria Bacteria 239 2.17e-58   NTclustered gi|2258833497|gb|CP060226.1| 2053688 g1306 i0 85.778 5.70588235294118 225 32 70 0 3 227 813885 813661 MAG: Candidatus Peribacteria bacterium isolate HK-STAS-PATE-10 chromosome, complete genome blastn 1843 239 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota Candidatus Peribacteria       Candidatus Peribacteria bacterium
12593266 12593266 PRJNA527965_S_NODE_1470_length_316_cov_6.395018_g1387_i0 PRJNA527965 1470 316 6.395018 20.20825688 Bacteria 2 Bacteria Bacteria 156 2.19e-33   NTclustered gi|2874253997|emb|OY970322.1| 179883 g1387 i0 83.529 89.797468354430407 170 24 53 4 1 168 417626 417459 MAG: uncultured Candidatus Saccharibacteria bacterium isolate MFD05512.bin.c.2 genome assembly, chromosome: 1 blastn 28376 156 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         uncultured Candidatus Saccharibacteria bacterium
13250691 13250691 PRJNA527965_S_NODE_111_length_849_cov_15.637592_g70_i0 PRJNA527965 111 849 15.637592 132.76315608 Candidatus Gracilibacteria bacterium 28_42_T64 1862133 Bacteria Bacteria 749 0   NTclustered gi|1769783243|gb|CP042461.1| 1862133 g70 i0 82.986 51.8138987043581 864 111 100 32 1 849 1250203 1251045 Candidatus Gracilibacteria bacterium 28_42_T64 chromosome, complete genome blastn 43990 749 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium 28_42_T64
14525768 14525768 PRJNA527965_S_NODE_3352_length_208_cov_2.514451_g3269_i0 PRJNA527965 3352 208 2.514451 5.23005808 uncultured candidate division SR1 bacterium 221237 Bacteria Bacteria 62.1 3.03e-5   NTclustered gi|218854872|gb|FJ479880.1| 221237 g3269 i0 74.324 13.5240384615385 148 37 71 1 30 177 371 225 Uncultured candidate division SR1 bacterium clone ZSR1-47 16S ribosomal RNA gene, partial sequence blastn 2813 62.1 1 Bacteria Bacteria candidate phyla   Candidatus Absconditibacteriota         uncultured candidate division SR1 bacterium
15799514 15799514 PRJNA527965_S_NODE_2973_length_221_cov_4.543011_g2890_i0 PRJNA527965 2973 221 4.543011 10.04005431 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 76.3 4.38e-14   NR MDD2745034.1 2044595 g2890 i0 63 0.990950226244344 73 21 99.1 2 1 219 307 373 MDD2745034.1 S-layer homology domain-containing protein [Candidatus Altimarinota bacterium] diamond 219 76.3 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
27804075 27804075 PRJNA527965_S_NODE_5624_length_158_cov_1.243902_g5541_i0 PRJNA527965 5624 158 1.243902 1.96536516 Candidatus Dependentiae bacterium HGW-Dependentiae-1 2013760 Bacteria Bacteria 43.9 0.00181   NR PKN03121.1 2013760 g5541 i0 54.5 0.835443037974684 44 20 83.5 0 133 2 31 74 PKN03121.1 MAG: hypothetical protein CVU75_03890 [Candidatus Dependentiae bacterium HGW-Dependentiae-1] diamond 132 43.9 1 Bacteria Bacteria candidate phyla             Candidatus Dependentiae bacterium HGW-Dependentiae-1

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;