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contig_metadata

6 rows where bioproject = "PRJNA527965", tax_clade = "Apusozoa" and tax_superkingdom = "Eukaryota"

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tax_superkingdom 1

  • Eukaryota · 6 ✖

tax_clade 1

  • Apusozoa · 6 ✖

bioproject 1

  • PRJNA527965 · 6 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1772053 1772053 PRJNA527965_S_NODE_3342_length_208_cov_4.028902_g3259_i0 PRJNA527965 3342 208 4.028902 8.38011616 Catacumbia lutetiensis 2925415 Root_unresolved Root_unresolved 152 1.75e-32   NTclustered gi|2206682166|gb|OM966639.1| 2925415 g3259 i0 88.71 54.4134615384615 124 14 60 0 26 149 5301 5178 Catacumbia lutetiensis strain ORSAYFEB19APU2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 11318 152 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Catacumbia Catacumbia lutetiensis
11975650 11975650 PRJNA527965_S_NODE_3770_length_196_cov_2.223602_g3687_i0 PRJNA527965 3770 196 2.223602 4.35825992 Apusomonas proboscidea 41120 Root_unresolved Root_unresolved 309 9.11e-80   NTclustered gi|2206682169|gb|OM966642.1| 41120 g3687 i0 96.757 3.31632653061224 185 6 94 0 12 196 5818 6002 Apusomonas proboscidea strain MPSANABRIA15 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 650 309 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Apusomonas Apusomonas proboscidea
11975679 11975679 PRJNA527965_S_NODE_530_length_468_cov_63.748268_g448_i0 PRJNA527965 530 468 63.748268 298.34189424 Karpovia croatica 2925417 Root_unresolved Root_unresolved 100 1.6e-16   NTclustered gi|2206682173|gb|OM966646.1| 2925417 g448 i0 88.235 13.1068376068376 85 9 18 1 342 426 6020 6103 Karpovia croatica strain CRO19P6 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 6134 100 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Karpovia Karpovia croatica
20240789 20240789 PRJNA527965_S_NODE_3756_length_196_cov_4.310559_g3673_i0 PRJNA527965 3756 196 4.310559 8.44869564 Apusomonadidae 172820 Root_unresolved Root_unresolved 115 2.13e-21   NTclustered gi|300078506|gb|GU001168.1| 857050 g3673 i0 82.576 7.6530612244898 132 21 67 2 2 132 3855 3725 Amastigomonas sp. EEG-2010a 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 1500 115 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Amastigomonas Amastigomonas sp. EEG-2010a
22173679 22173679 PRJNA527965_S_NODE_4118_length_187_cov_1.309211_g4035_i0 PRJNA527965 4118 187 1.309211 2.44822457 Singekia franciliensis 2925418 Root_unresolved Root_unresolved 335 1.4199999999999996e-87   NTclustered gi|2206682165|gb|OM966638.1| 2925418 g4035 i0 98.93 48.08556149732621 187 2 100 0 1 187 3635 3821 Singekia franciliensis strain ORSAYFEB19APU1 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 8992 335 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Singekia Singekia franciliensis
22173706 22173706 PRJNA527965_S_NODE_5598_length_158_cov_1.642276_g5515_i0 PRJNA527965 5598 158 1.642276 2.59479608 Apusomonas proboscidea 41120 Root_unresolved Root_unresolved 287 3.29e-73   NTclustered gi|61187360|gb|AY752987.1| 41120 g5515 i0 99.367 8.91139240506329 158 1 100 0 1 158 2534 2691 Apusomonas sp. CCAP1905/1 28S ribosomal RNA gene, partial sequence blastn 1408 287 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Apusomonas Apusomonas proboscidea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;