RNAquarium Metadata Server
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contig_metadata

11 rows where bioproject = "PRJNA527965", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 11 ✖

tax_clade 1

  • Amoebozoa · 11 ✖

bioproject 1

  • PRJNA527965 · 11 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3047878 3047878 PRJNA527965_S_NODE_3463_length_204_cov_4.041420_g3380_i0 PRJNA527965 3463 204 4.04142 8.2444968 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 270 4.5099999999999985e-68   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g3380 i0 90.686 34.3088235294118 204 18 99 1 1 203 3075 3278 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 6999 270 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
5600763 5600763 PRJNA527965_S_NODE_6085_length_152_cov_1.376068_g6002_i0 PRJNA527965 6085 152 1.376068 2.09162336 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 158 2.56e-34   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g6002 i0 90.756 10.5592105263158 119 9 77 2 1 117 4762 4644 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 1605 158 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
6217839 6217839 PRJNA527965_S_NODE_3665_length_199_cov_3.487805_g3582_i0 PRJNA527965 3665 199 3.487805 6.94073195 Cryptodifflugia 1078833 Tubulinea other_Eukaryota 313 7.18e-81   NTclustered gi|345294024|gb|JF694280.1| 1078836 g3582 i0 94.975 58.8040201005025 199 10 100 0 1 199 150 348 Cryptodifflugia operculata small subunit ribosomal RNA gene, partial sequence blastn 11702 313 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
9425114 9425114 PRJNA527965_S_NODE_3068_length_217_cov_5.807692_g2985_i0 PRJNA527965 3068 217 5.807692 12.60269164 Spumochlamys bryora 675832 Tubulinea other_Eukaryota 363 7.8e-96   NTclustered gi|259595677|gb|FJ705341.1| 675832 g2985 i0 96.774 11.7327188940092 217 7 100 0 1 217 2181 1965 Spumochlamys bryora clone 1901 18S ribosomal RNA gene, partial sequence blastn 2546 363 1 Eukaryota Amoebozoa   Tubulinea Corycida   Microchlamyiidae Spumochlamys Spumochlamys bryora
10700813 10700813 PRJNA527965_S_NODE_1049_length_361_cov_7.831288_g966_i0 PRJNA527965 1049 361 7.831288 28.27094968 Spumochlamys bryora 675832 Tubulinea other_Eukaryota 597 3.499999999999999e-166   NTclustered gi|259595677|gb|FJ705341.1| 675832 g966 i0 100 30.3019390581717 323 0 100 0 1 323 1231 909 Spumochlamys bryora clone 1901 18S ribosomal RNA gene, partial sequence blastn 10939 597 1 Eukaryota Amoebozoa   Tubulinea Corycida   Microchlamyiidae Spumochlamys Spumochlamys bryora
11975628 11975628 PRJNA527965_S_NODE_2770_length_230_cov_1.620513_g2687_i0 PRJNA527965 2770 230 1.620513 3.7271799 Spumochlamys bryora 675832 Tubulinea other_Eukaryota 359 1.0799999999999999e-94   NTclustered gi|259595677|gb|FJ705341.1| 675832 g2687 i0 99.492 11.8826086956522 197 1 86 0 1 197 197 1 Spumochlamys bryora clone 1901 18S ribosomal RNA gene, partial sequence blastn 2733 359 1 Eukaryota Amoebozoa   Tubulinea Corycida   Microchlamyiidae Spumochlamys Spumochlamys bryora
18348464 18348464 PRJNA527965_S_NODE_595_length_452_cov_3.669065_g513_i0 PRJNA527965 595 452 3.669065 16.5841738 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 497 4.6799999999999996e-136   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g513 i0 88.62 31.787610619469 413 41 90 5 1 409 4465 4055 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 14368 497 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
19622849 19622849 PRJNA527965_S_NODE_1016_length_365_cov_6.151515_g933_i0 PRJNA527965 1016 365 6.151515 22.45302975 Spumochlamys bryora 675832 Tubulinea other_Eukaryota 636 7.519999999999998e-178   NTclustered gi|259595677|gb|FJ705341.1| 675832 g933 i0 98.087 18.9041095890411 366 6 100 1 1 365 1927 1562 Spumochlamys bryora clone 1901 18S ribosomal RNA gene, partial sequence blastn 6900 636 1 Eukaryota Amoebozoa   Tubulinea Corycida   Microchlamyiidae Spumochlamys Spumochlamys bryora
20899023 20899023 PRJNA527965_S_NODE_4297_length_182_cov_5.428571_g4214_i0 PRJNA527965 4297 182 5.428571 9.87999922 Spumochlamys bryora 675832 Tubulinea other_Eukaryota 327 2.3e-85   NTclustered gi|259595677|gb|FJ705341.1| 675832 g4214 i0 99.444 4.42307692307692 180 1 99 0 3 182 354 175 Spumochlamys bryora clone 1901 18S ribosomal RNA gene, partial sequence blastn 805 327 1 Eukaryota Amoebozoa   Tubulinea Corycida   Microchlamyiidae Spumochlamys Spumochlamys bryora
22791407 22791407 PRJNA527965_S_NODE_2018_length_275_cov_1.904167_g1935_i0 PRJNA527965 2018 275 1.904167 5.23645925 Hartmannellidae 5776 Tubulinea other_Eukaryota 298 2.94e-76   NTclustered gi|11527309|gb|AF293902.1|AF293902 136464 g1935 i0 96.667 61.56 180 5 65 1 96 275 1028 1206 Saccamoeba limax small subunit ribosomal RNA gene, complete sequence blastn 16929 298 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba limax
23449317 23449317 PRJNA527965_S_NODE_739_length_412_cov_3.599469_g656_i0 PRJNA527965 739 412 3.599469 14.82981228 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 580 4.08e-161   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g656 i0 92.195 74.9781553398058 410 32 99 0 3 412 2279 2688 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 30891 580 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;