RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA527965", tax_clade = "Amoebozoa" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 3 ✖

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA527965 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8149892 8149892 PRJNA527965_S_NODE_4547_length_176_cov_3.198582_g4464_i0 PRJNA527965 4547 176 3.198582 5.62950432 Entamoeba bovis 715123 Evosea other_Eukaryota 326 7.92e-85   NTclustered gi|2852229445|gb|PQ604616.1| 715123 g4464 i0 100 92.8806818181818 176 0 100 0 1 176 889 714 Entamoeba bovis isolate ShanYin1 small subunit ribosomal RNA gene, partial sequence blastn 16347 326 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba bovis
17074222 17074222 PRJNA527965_S_NODE_5734_length_156_cov_2.347107_g5651_i0 PRJNA527965 5734 156 2.347107 3.66148692 Entamoeba histolytica 5759 Evosea other_Eukaryota 220 3.33e-53   NTclustered gi|415339|emb|X65163.1| 5759 g5651 i0 92.81 2.69230769230769 153 9 97 2 1 152 6048 6199 E.histolytica rRNA blastn 420 220 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica
24722961 24722961 PRJNA527965_S_NODE_5540_length_159_cov_1.879032_g5457_i0 PRJNA527965 5540 159 1.879032 2.98766088 Cavenderia fasciculata 261658 Evosea other_Eukaryota 89.8 1e-13   NTclustered gi|187764061|ref|NC_010653.1| 261658 g5457 i0 98.039 0.679245283018868 51 1 32 0 48 98 21177 21227 Dictyostelium fasciculatum mitochondrion, complete genome blastn 108 89.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;