RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA527965", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 3 ✖

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA527965 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1772106 1772106 PRJNA527965_S_NODE_5722_length_156_cov_3.173554_g5639_i0 PRJNA527965 5722 156 3.173554 4.95074424 Vannella septentrionalis 197531 Discosea other_Eukaryota 235 1.19e-57   NTclustered gi|300078499|gb|GU001161.1| 197531 g5639 i0 93.671 88.3846153846154 158 8 100 2 1 156 2087 1930 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 13788 235 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
9425078 9425078 PRJNA527965_S_NODE_1548_length_311_cov_3.340580_g1465_i0 PRJNA527965 1548 311 3.34058 10.3892038 Thecamoeba foliovenanda 2653195 Discosea other_Eukaryota 377 4.22e-100   NTclustered gi|1758284524|gb|MN544291.1| 2653195 g1465 i0 89.865 91.064308681672 296 26 95 4 1 294 1467 1174 Thecamoeba foliovenanda strain Ta68 small subunit ribosomal RNA gene, partial sequence blastn 28321 377 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Thecamoeba Thecamoeba foliovenanda
10700864 10700864 PRJNA527965_S_NODE_3249_length_211_cov_3.068182_g3166_i0 PRJNA527965 3249 211 3.068182 6.47386402 Vannella septentrionalis 197531 Discosea other_Eukaryota 248 2.2e-61   NTclustered gi|300078499|gb|GU001161.1| 197531 g3166 i0 91.667 24.1374407582938 180 13 85 2 1 179 2510 2688 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 5093 248 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;