RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

16 rows where bioproject = "PRJNA526367" and tax_superkingdom = "Archaea"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

  • Archaea · 16 ✖

bioproject 1

  • PRJNA526367 · 16 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4322927 4322927 PRJNA526367_P_NODE_41704_length_180_cov_2.335878_g41494_i0 PRJNA526367 41704 180 2.335878 4.2045804 Halorubrum hochsteinianum 2949307 Archaea Archaea 254 3.9e-63   NTclustered gi|2251941870|gb|CP098416.1| 2949307 g41494 i0 93.567 29.4722222222222 171 10 95 1 9 179 29012 28843 Halorubrum hochsteinianum strain 1-13-28 plasmid unnamed1, complete sequence blastn 5305 254 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum hochsteinianum
26697436 26697436 PRJNA526367_P_NODE_46781_length_171_cov_12.901639_g46571_i0 PRJNA526367 46781 171 12.901639 22.06180269 Nanobdellota archaeon 2026764 Archaea Archaea 85.1 4.94e-18   NR MEK6897373.1 2026764 g46571 i0 77.8 0.789473684210526 45 10 78.9 0 142 8 67 111 MEK6897373.1 glycosyltransferase [Nanoarchaeota archaeon] diamond 135 85.1 1 Archaea   Nanobdellati Nanobdellota         Nanobdellota archaeon
27014064 27014064 PRJNA526367_P_NODE_58662_length_160_cov_4.000000_g58452_i0 PRJNA526367 58662 160 4 6.4 Candidatus Poseidoniales archaeon 2163009 Archaea Archaea 61.6 2.64e-9   NR MEK9694417.1 2163009 g58452 i0 59.6 0.975 52 21 97.5 0 4 159 618 669 MEK9694417.1 hypothetical protein [Candidatus Poseidoniales archaeon] diamond 156 61.6 1 Archaea   Methanobacteriati Thermoplasmatota Candidatus Poseidoniia Candidatus Poseidoniales     Candidatus Poseidoniales archaeon
27866943 27866943 PRJNA526367_P_NODE_61665_length_156_cov_3.392523_g61455_i0 PRJNA526367 61665 156 3.392523 5.29233588 Candidatus Nitrosotenuis sp. 2507556 Archaea Archaea 94.4 7.37e-21   NR TBR23904.1 2507556 g61455 i0 88.2 0.980769230769231 51 6 98.1 0 3 155 684 734 TBR23904.1 MAG: hypothetical protein EPO63_04895 [Candidatus Nitrosotenuis sp.] diamond 153 94.4 1 Archaea   Thermoproteati Nitrososphaerota       Candidatus Nitrosotenuis Candidatus Nitrosotenuis sp.
28103170 28103170 PRJNA526367_P_NODE_9845_length_324_cov_3.643636_g9636_i0 PRJNA526367 9845 324 3.643636 11.80538064 root 1 Root_unresolved Root_unresolved 49.7 3.26e-4   NR MBE6493241.1 2317 g9636 i0 71.9 1.82407407407407 32 9 29.6 0 97 2 22 53 MBE6493241.1 serine hydroxymethyltransferase [Methanosphaera stadtmanae] diamond 591 50.1 0.992015968063872 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera stadtmanae
28340663 28340663 PRJNA526367_P_NODE_39366_length_184_cov_3.229630_g39156_i0 PRJNA526367 39366 184 3.22963 5.9425192 Halanaeroarchaeum sulfurireducens 1604004 Archaea Archaea 90.9 8.53e-20   NR WP_050048371.1 1604004 g39156 i0 75.4 1.80978260869565 57 14 92.9 0 9 179 201 257 WP_050048371.1 hypothetical protein [Halanaeroarchaeum sulfurireducens] diamond 333 90.9 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halanaeroarchaeum Halanaeroarchaeum sulfurireducens
28751108 28751108 PRJNA526367_P_NODE_16367_length_324_cov_2.760000_g16158_i0 PRJNA526367 16367 324 2.76 8.9424 Natrialba aegyptia 129789 Archaea Archaea 57.8 3.03e-8   NR WP_049903945.1 129789 g16158 i0 75.8 0.305555555555556 33 8 30.6 0 322 224 53 85 WP_049903945.1 hypothetical protein [Natrialba aegyptia] diamond 99 57.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natrialba Natrialba aegyptia
29004193 29004193 PRJNA526367_P_NODE_29768_length_324_cov_1.534545_g29559_i0 PRJNA526367 29768 324 1.534545 4.9719258 Natronosalvus rutilus 2953753 Archaea Archaea 44.7 0.00457   NR WP_254155871.1 2953753 g29559 i0 64.5 0.842592592592593 31 11 28.7 0 98 6 19 49 WP_254155871.1 ArsR/SmtB family transcription factor [Natronosalvus rutilus] diamond 273 44.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natronosalvus Natronosalvus rutilus
30456917 30456917 PRJNA526367_P_NODE_55193_length_163_cov_0.894737_g54983_i0 PRJNA526367 55193 163 0.894737 1.45842131 Natronosalvus rutilus 2953753 Archaea Archaea 45.8 0.00103   NR WP_254156332.1 2953753 g54983 i0 73.3 2.28220858895706 30 8 55.2 0 5 94 288 317 WP_254156332.1 A/G-specific adenine glycosylase [Natronosalvus rutilus] diamond 372 45.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natronosalvus Natronosalvus rutilus
30692873 30692873 PRJNA526367_P_NODE_64253_length_152_cov_10.359223_g64043_i0 PRJNA526367 64253 152 10.359223 15.74601896 root 1 Root_unresolved Root_unresolved 47.8 1.79e-4   NR KPN28887.1 699431 g64043 i0 62.9 1.5 35 13 69.1 0 140 36 271 305 KPN28887.1 phage P2 GpE [Halolamina pelagica] diamond 228 47.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halolamina Halolamina pelagica
30804047 30804047 PRJNA526367_P_NODE_29474_length_324_cov_1.610909_g29265_i0 PRJNA526367 29474 324 1.610909 5.21934516 archaeon 1906665 Archaea Archaea 62.8 5.77e-10   NR RYH25812.1 1906665 g29265 i0 78.1 0.296296296296296 32 7 29.6 0 322 227 32 63 RYH25812.1 MAG: hypothetical protein EON65_15250 [archaeon] diamond 96 62.8 1 Archaea               archaeon
30850879 30850879 PRJNA526367_P_NODE_64074_length_153_cov_3.461538_g63864_i0 PRJNA526367 64074 153 3.461538 5.29615314 Thermococcus 2263 Archaea Archaea 85.1 1.89e-18   NR WP_297416816.1 35749 g63864 i0 85.1 1.84313725490196 47 7 92.2 0 149 9 156 202 WP_297416816.1 imidazole glycerol phosphate synthase subunit HisF [Thermococcus sp.] diamond 282 85.9 0.990686845168801 Archaea   Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus sp.
31182926 31182926 PRJNA526367_P_NODE_39315_length_184_cov_3.762963_g39105_i0 PRJNA526367 39315 184 3.762963 6.92385192 Halobacterium 2239 Archaea Archaea 79.7 1.51e-15   NR WP_136361728.1 2239 g39105 i0 74.1 0.945652173913043 58 15 94.6 0 9 182 469 526 WP_136361728.1 MULTISPECIES: SIR2 family protein [Halobacterium] diamond 174 79.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halobacterium  
31373165 31373165 PRJNA526367_P_NODE_9676_length_324_cov_3.683636_g9467_i0 PRJNA526367 9676 324 3.683636 11.93498064 Halodesulfurarchaeum sp. HSR-GB 3074077 Archaea Archaea 54.7 1.4e-7   NR WP_310554274.1 3074077 g9467 i0 96.4 0.259259259259259 28 1 25.9 0 310 227 13 40 WP_310554274.1 hypothetical protein [Halodesulfurarchaeum sp. HSR-GB] diamond 84 54.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halodesulfurarchaeum Halodesulfurarchaeum sp. HSR-GB
31784010 31784010 PRJNA526367_P_NODE_36077_length_190_cov_3.255319_g35867_i0 PRJNA526367 36077 190 3.255319 6.1851061 Halodesulfurarchaeum sp. 1980530 Archaea Archaea 103 9.24e-24   NR MDZ7850179.1 1980530 g35867 i0 86.7 1.91052631578947 60 8 94.7 0 9 188 309 368 MDZ7850179.1 DNA mismatch repair protein MutS [Halodesulfurarchaeum sp.] diamond 363 103 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halodesulfurarchaeum Halodesulfurarchaeum sp.
32889845 32889845 PRJNA526367_P_NODE_60220_length_158_cov_2.339450_g60010_i0 PRJNA526367 60220 158 2.33945 3.696331 archaeon 1906665 Archaea Archaea 65.1 1.48e-10   NR RYH13372.1 1906665 g60010 i0 57.1 0.930379746835443 49 21 93 0 156 10 210 258 RYH13372.1 MAG: hypothetical protein EON65_35815 [archaeon] diamond 147 65.1 1 Archaea               archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;