RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA526367" and tax_phylum = "Bacillariophyta"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA526367 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13867582 13867582 PRJNA526367_P_NODE_39331_length_184_cov_3.651852_g39121_i0 PRJNA526367 39331 184 3.651852 6.71940768 Bacillariophyceae 33849 SAR_Eukaryotes SAR_Eukaryotes 294 2.36e-75   NTclustered gi|1862846707|emb|LR812489.1| 186038 g39121 i0 96.61 97.0597826086957 177 6 96 0 8 184 7748 7924 Fragilariopsis kerguelensis, rDNA tandem repeat intergenic spacer region, 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2 and 28S ribosomal RNA gene, complete sequence blastn 17859 294 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Fragilariopsis Fragilariopsis kerguelensis
24722217 24722217 PRJNA526367_P_NODE_49180_length_168_cov_5.327731_g48970_i0 PRJNA526367 49180 168 5.327731 8.95058808 Skeletonema subsalsum 216763 SAR_Eukaryotes SAR_Eukaryotes 255 1e-63   NTclustered gi|56483685|gb|AY684967.1| 216763 g48970 i0 95.652 95.8333333333333 161 4 94 1 4 161 1590 1430 Skeletonema subsalsum strain CCAP1077/8 clone J 18S small subunit ribosomal RNA gene, partial sequence blastn 16100 255 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Skeletonemataceae Skeletonema Skeletonema subsalsum
31246451 31246451 PRJNA526367_P_NODE_49595_length_167_cov_10.779661_g49385_i0 PRJNA526367 49595 167 10.779661 18.002033870000002 Fragilaria crotonensis 210448 SAR_Eukaryotes SAR_Eukaryotes 60.5 7.28e-9   NR KAI2488951.1 210448 g49385 i0 60.9 1.77844311377246 46 18 82.6 0 2 139 13 58 KAI2488951.1 carbohydrate kinase-like protein [Fragilaria crotonensis] diamond 297 60.5 1 Eukaryota Sar   Bacillariophyta Fragilariophyceae Fragilariales Fragilariaceae Fragilaria Fragilaria crotonensis
31594609 31594609 PRJNA526367_P_NODE_30536_length_323_cov_2.850365_g30327_i0 PRJNA526367 30536 323 2.850365 9.20667895 Thalassiosira oceanica 159749 SAR_Eukaryotes SAR_Eukaryotes 43.9 0.0391   NR EJK50985.1 159749 g30327 i0 54.8 0.287925696594427 31 14 28.8 0 316 224 1215 1245 EJK50985.1 hypothetical protein THAOC_29894, partial [Thalassiosira oceanica] diamond 93 43.9 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Thalassiosiraceae Thalassiosira Thalassiosira oceanica

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;