RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA526367" and tax_phylum = "Artverviricota"

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tax_superkingdom 1

tax_phylum 1

  • Artverviricota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA526367 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8766638 8766638 PRJNA526367_P_NODE_33027_length_233_cov_8.076087_g32817_i0 PRJNA526367 33027 233 8.076087 18.81728271 Gammaretrovirus 153135 Viruses Viruses 403 4.9999999999999985e-108   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g32817 i0 99.111 70.1845493562232 225 1 97 1 4 228 4122 3899 Moloney murine leukemia virus, complete genome blastn 16353 403 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
11317038 11317038 PRJNA526367_P_NODE_49489_length_168_cov_1.932773_g49279_i0 PRJNA526367 49489 168 1.932773 3.24705864 root 1 Root_unresolved Root_unresolved 311 2.11e-80   NTclustered gi|2787679944|gb|PQ144805.1| 11676 g49279 i0 100 100 168 0 100 0 1 168 1098 931 HIV-1 isolate Hu_NL_LA_M3171 from USA gag protein (gag) and pol protein (pol) genes, partial cds blastn 16800 311 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
12592882 12592882 PRJNA526367_P_NODE_51290_length_166_cov_3.478632_g51080_i0 PRJNA526367 51290 166 3.478632 5.77452912 root 1 Root_unresolved Root_unresolved 285 1.26e-72   NTclustered gi|60236|emb|X63045.1| 11676 g51080 i0 97.605 111.668674698795 167 3 100 1 1 166 445 611 HIV-1 nef gene (PCRnef6) blastn 18537 285 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;