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contig_metadata

11 rows where bioproject = "PRJNA526367", tax_kingdom = "Pseudomonadati" and tax_phylum = "Nitrospirota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nitrospirota · 11 ✖

tax_kingdom 1

  • Pseudomonadati · 11 ✖

bioproject 1

  • PRJNA526367 · 11 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11975050 11975050 PRJNA526367_P_NODE_61110_length_156_cov_7.943925_g60900_i0 PRJNA526367 61110 156 7.943925 12.392523 Candidatus Manganitrophaceae bacterium 2932367 Bacteria Bacteria 219 1.2e-52   NTclustered gi|2874254047|emb|OY970371.1| 2932367 g60900 i0 92.763 90.0576923076923 152 10 97 1 2 152 2247798 2247647 MAG: Candidatus Manganitrophaceae bacterium isolate MFD03066.bin.c.2 genome assembly, chromosome: 1 blastn 14049 219 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Candidatus Troglogloeales Candidatus Manganitrophaceae   Candidatus Manganitrophaceae bacterium
13250155 13250155 PRJNA526367_P_NODE_59371_length_159_cov_3.709091_g59161_i0 PRJNA526367 59371 159 3.709091 5.89745469 Nitrospira sp. 70125 Bacteria Bacteria 139 9.82e-29   NTclustered gi|2511631678|gb|CP126123.1| 70125 g59161 i0 84.028 13.2389937106918 144 23 91 0 6 149 3514067 3513924 MAG: Nitrospira sp. isolate bin_003 chromosome, complete genome blastn 2105 139 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
14524906 14524906 PRJNA526367_P_NODE_40032_length_183_cov_2.216418_g39822_i0 PRJNA526367 40032 183 2.216418 4.05604494 Nitrospira sp. 70125 Bacteria Bacteria 335 1.3799999999999996e-87   NTclustered gi|2863125063|dbj|AP038805.1| 70125 g39822 i0 100 88.3551912568306 181 0 99 0 1 181 2094009 2094189 MAG: Nitrospira sp. AFB01 DNA, complete genome blastn 16169 335 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
17073555 17073555 PRJNA526367_P_NODE_5834_length_325_cov_3.778986_g5625_i0 PRJNA526367 5834 325 3.778986 12.2817045 uncultured Nitrospira sp. 157176 Bacteria Bacteria 176 1.74e-39   NTclustered gi|407357704|gb|JX493707.1| 157176 g5625 i0 98.98 59.08 98 1 59 0 225 322 424 521 Uncultured Nitrospira sp. clone WHs1-75 16S ribosomal RNA gene, partial sequence blastn 19201 176 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira uncultured Nitrospira sp.
26712538 26712538 PRJNA526367_P_NODE_18741_length_324_cov_2.538182_g18532_i0 PRJNA526367 18741 324 2.538182 8.22370968 Nitrospira 1234 Bacteria Bacteria 65.1 4.6e-10   NR NOS80924.1 70125 g18532 i0 90.6 0.583333333333333 32 3 29.6 0 323 228 137 168 NOS80924.1 ABC transporter substrate-binding protein [Nitrospira sp.] diamond 189 65.1 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
27819356 27819356 PRJNA526367_P_NODE_28644_length_324_cov_1.709091_g28435_i0 PRJNA526367 28644 324 1.709091 5.53745484 Nitrospira 1234 Bacteria Bacteria 61.2 2.85e-8   NR TKB64007.1 70125 g28435 i0 87.1 0.861111111111111 31 4 28.7 0 98 6 143 173 TKB64007.1 MAG: site-specific integrase [Nitrospira sp.] diamond 279 61.2 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
28197885 28197885 PRJNA526367_P_NODE_30166_length_323_cov_4.003650_g29957_i0 PRJNA526367 30166 323 4.00365 12.9317895 Nitrospira 1234 Bacteria Bacteria 64.7 1.78e-9   NR MBH0186596.1 70125 g29957 i0 100 0.575851393188854 31 0 28.8 0 318 226 231 261 MBH0186596.1 proline--tRNA ligase [Nitrospira sp.] diamond 186 64.7 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
29681674 29681674 PRJNA526367_P_NODE_17970_length_324_cov_2.614545_g17761_i0 PRJNA526367 17970 324 2.614545 8.4711258 Nitrospira 1234 Bacteria Bacteria 68.2 5.5e-11   NR MBH0185765.1 70125 g17761 i0 100 1.14814814814815 31 0 28.7 0 226 318 91 121 MBH0185765.1 glycine cleavage system aminomethyltransferase GcvT [Nitrospira sp.] diamond 372 68.2 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
30408915 30408915 PRJNA526367_P_NODE_22453_length_324_cov_2.229091_g22244_i0 PRJNA526367 22453 324 2.229091 7.22225484 Nitrospira 1234 Bacteria Bacteria 71.6 2.42e-12   NR MBH0176813.1 70125 g22244 i0 100 1.22222222222222 33 0 30.6 0 324 226 109 141 MBH0176813.1 dihydroorotase [Nitrospira sp.] diamond 396 71.6 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
32195492 32195492 PRJNA526367_P_NODE_63058_length_154_cov_4.704762_g62848_i0 PRJNA526367 63058 154 4.704762 7.24533348 Candidatus Nitrospira kreftii 2652173 Bacteria Bacteria 84 1.46e-17   NR QPD06061.1 2652173 g62848 i0 92.7 3.19480519480519 41 3 79.9 0 31 153 267 307 QPD06061.1 MAG: hypothetical protein Nkreftii_003835 [Candidatus Nitrospira kreftii] diamond 492 84 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Candidatus Nitrospira kreftii
32747709 32747709 PRJNA526367_P_NODE_24160_length_324_cov_2.087273_g23951_i0 PRJNA526367 24160 324 2.087273 6.76276452 Nitrospira 1234 Bacteria Bacteria 67 4.75e-11   NR HKE62746.1 70125 g23951 i0 87.9 3.5462962962963 33 4 30.6 0 100 2 90 122 HKE62746.1 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [Nitrospira sp.] diamond 1149 67 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;