RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA526367", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 2 ✖

tax_kingdom 1

  • Bacillati · 2 ✖

bioproject 1

  • PRJNA526367 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28340662 28340662 PRJNA526367_P_NODE_3666_length_354_cov_10.783607_g3458_i0 PRJNA526367 3666 354 10.783607 38.17396878 Mycoplasmopsis arginini 2094 Bacteria Bacteria 47 8.02e-4   NR WP_282459194.1 2094 g3458 i0 72 0.211864406779661 25 7 21.2 0 80 6 16 40 WP_282459194.1 hypothetical protein, partial [Mycoplasmopsis arginini] diamond 75 47 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis arginini
29351109 29351109 PRJNA526367_P_NODE_17689_length_324_cov_2.640000_g17480_i0 PRJNA526367 17689 324 2.64 8.5536 Mycoplasmopsis arginini 2094 Bacteria Bacteria 43.1 0.0133   NR MDI3350086.1 2094 g17480 i0 77.3 0.203703703703704 22 5 20.4 0 96 31 74 95 MDI3350086.1 hypothetical protein [Mycoplasmopsis arginini] diamond 66 43.1 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis arginini

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;