RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA526367" and tax_clade = "core chlorophytes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 8 ✖

bioproject 1

  • PRJNA526367 · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3047151 3047151 PRJNA526367_P_NODE_50083_length_167_cov_3.601695_g49873_i0 PRJNA526367 50083 167 3.601695 6.01483065 Coccomyxa subellipsoidea 248742 Plants Plants 268 1.28e-67   NTclustered gi|1360638129|gb|AC277064.1| 574566 g49873 i0 97.468 81.3473053892216 158 3 94 1 8 164 1418 1261 Coccomyxa subellipsoidea C-169 clone FAHX137-B20, complete sequence blastn 13585 268 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
7491874 7491874 PRJNA526367_P_NODE_41226_length_181_cov_1.303030_g41016_i0 PRJNA526367 41226 181 1.30303 2.3584843 Eukaryota 2759 Plants Plants 228 2.379999999999999e-55   NTclustered gi|2568387962|gb|MZ452236.2| 43260 g41016 i0 94.558 55.7237569060773 147 8 81 0 8 154 44 190 Rhexinema paucicellulare isolate MD1 large subunit ribosomal RNA gene, partial sequence blastn 10086 228 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulotrichales Helicodictyaceae Rhexinema Rhexinema paucicellulare
15142084 15142084 PRJNA526367_P_NODE_63032_length_154_cov_4.847619_g62822_i0 PRJNA526367 63032 154 4.847619 7.46533326 Monostromataceae 153902 Plants Plants 250 4.18e-62   NTclustered gi|2473930131|ref|NC_072924.1| 138667 g62822 i0 97.279 140.272727272727 147 4 95 0 1 147 176716 176570 Monostroma nitidum chloroplast, complete genome blastn 21602 250 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulvales Monostromataceae Monostroma Monostroma nitidum
17073362 17073362 PRJNA526367_P_NODE_46654_length_172_cov_2.487805_g46444_i0 PRJNA526367 46654 172 2.487805 4.2790246 Chloroidium ellipsoideum 63676 Plants Plants 182 1.76e-41   NTclustered gi|535783|dbj|D17810.1|CHLLSURRNA 63676 g46444 i0 86.957 1.86627906976744 161 21 94 0 3 163 3641 3481 Chlorella ellipsoidea gene for large subunit rRNA, with group-I self-splicing intron blastn 321 182 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium ellipsoideum
17691939 17691939 PRJNA526367_P_NODE_65974_length_150_cov_8.475248_g65764_i0 PRJNA526367 65974 150 8.475248 12.712872 Chlorellaceae 35461 Plants Plants 246 5.2199999999999995e-61   NTclustered gi|1798226562|gb|MN960174.1| 3079 g65764 i0 99.265 90.6533333333333 136 1 91 0 7 142 580 715 Chlorella sp. strain str193-2.5 small subunit ribosomal RNA gene, partial sequence blastn 13598 246 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sp.
23448492 23448492 PRJNA526367_P_NODE_4659_length_336_cov_3.153310_g4450_i0 PRJNA526367 4659 336 3.15331 10.5951216 Blidingia sp. DT1 2022611 Plants Plants 226 1.76e-54   NTclustered gi|1220117795|gb|KY401415.1| 2022611 g4450 i0 100 45.0982142857143 122 0 65 0 208 329 2425 2304 Blidingia sp. DT1 28S ribosomal RNA gene, partial sequence blastn 15153 226 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulvales Ulvaceae Blidingia Blidingia sp. DT1
31166537 31166537 PRJNA526367_P_NODE_14535_length_324_cov_2.956364_g14326_i0 PRJNA526367 14535 324 2.956364 9.57861936 Chlamydomonadaceae 3051 Plants Plants 45.1 0.0148   NR KAG2482428.1 47281 g14326 i0 63.3 0.537037037037037 30 11 27.8 0 8 97 708 737 KAG2482428.1 hypothetical protein HYH03_018632 [Edaphochlamys debaryana] diamond 174 45.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales   Edaphochlamys Edaphochlamys debaryana
31767701 31767701 PRJNA526367_P_NODE_43517_length_177_cov_2.273438_g43307_i0 PRJNA526367 43517 177 2.273438 4.02398526 Chlorella 3071 Plants Plants 43.9 0.00601   NR PRW56290.1 3076 g43307 i0 71.4 1.20338983050847 35 10 59.3 0 118 14 28 62 PRW56290.1 CHY zinc finger [Chlorella sorokiniana] diamond 213 44.3 0.99097065462754 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sorokiniana

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;