RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA526367", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 2 ✖

bioproject 1

  • PRJNA526367 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12592716 12592716 PRJNA526367_P_NODE_3850_length_349_cov_3.570000_g3642_i0 PRJNA526367 3850 349 3.57 12.4593 Metazoa 33208 Nematoda Nematoda 241 6.55e-59   NTclustered gi|1174020828|gb|KY887583.1| 6293 g3642 i0 94.268 44.9885386819484 157 9 45 0 6 162 1085 929 Wuchereria bancrofti isolate AP10 small subunit ribosomal RNA gene, partial sequence blastn 15701 241 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Wuchereria Wuchereria bancrofti
29098505 29098505 PRJNA526367_P_NODE_25328_length_324_cov_2.003636_g25119_i0 PRJNA526367 25328 324 2.003636 6.49178064 Wuchereria bancrofti 6293 Nematoda Nematoda 55.5 3.15e-6   NR VDM16675.1 6293 g25119 i0 38.7 0.981481481481482 106 17 98.1 1 324 7 140 197 VDM16675.1 unnamed protein product [Wuchereria bancrofti] diamond 318 55.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Wuchereria Wuchereria bancrofti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;