RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA526367", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Altimarinota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Candidatus Altimarinota · 3 ✖

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA526367 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19622377 19622377 PRJNA526367_P_NODE_64636_length_152_cov_5.766990_g64426_i0 PRJNA526367 64636 152 5.76699 8.7658248 Candidatus Gracilibacteria bacterium HOT-871 1540872 Bacteria Bacteria 255 8.83e-64   NTclustered gi|1275383184|gb|CP017714.1| 1540872 g64426 i0 99.291 3.68421052631579 141 1 93 0 8 148 891160 891300 Candidatus Gracilibacteria bacterium HOT-871, complete genome blastn 560 255 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium HOT-871
27866937 27866937 PRJNA526367_P_NODE_45425_length_174_cov_1.632000_g45215_i0 PRJNA526367 45425 174 1.632 2.83968 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 59.3 2.04e-8   NR MBW7954927.1 2044595 g45215 i0 66.7 0.620689655172414 36 12 62.1 0 2 109 378 413 MBW7954927.1 MATE family efflux transporter [Candidatus Altimarinota bacterium] diamond 108 59.3 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
31942133 31942133 PRJNA526367_P_NODE_35657_length_191_cov_4.288732_g35447_i0 PRJNA526367 35657 191 4.288732 8.19147812 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 73.2 6.7e-14   NR HPU95189.1 2044595 g35447 i0 59 1.91623036649215 61 25 95.8 0 190 8 75 135 HPU95189.1 ribonuclease R [Candidatus Altimarinota bacterium] diamond 366 73.2 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;