RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA526367", tax_clade = "Amoebozoa" and tax_phylum = "Evosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Evosea · 4 ✖

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA526367 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10699897 10699897 PRJNA526367_P_NODE_35509_length_192_cov_3.202797_g35299_i0 PRJNA526367 35509 192 3.202797 6.14937024 Entamoeba gingivalis 38877 Evosea other_Eukaryota 326 8.82e-85   NTclustered gi|2781670152|dbj|LC832224.1| 38877 g35299 i0 98.396 72.0885416666667 187 0 96 2 1 185 697 512 Entamoeba gingivalis ST1-1_human_Ishikawa_H118_2017 gene for 18S ribosomal RNA, partial sequence blastn 13841 326 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba gingivalis
14525142 14525142 PRJNA526367_P_NODE_55132_length_163_cov_1.333333_g54922_i0 PRJNA526367 55132 163 1.333333 2.17333279 Echinostelium minutum 300235 Evosea other_Eukaryota 147 6.0599999999999996e-31   NTclustered gi|381139237|emb|HE655044.1| 300235 g54922 i0 90.265 62.9570552147239 113 9 69 2 7 118 817 706 Echinostelium minutum partial 28S rRNA gene, strain ATCC 22345 blastn 10262 147 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Echinosteliales Echinosteliidae Echinostelium Echinostelium minutum
18347905 18347905 PRJNA526367_P_NODE_65355_length_151_cov_6.401961_g65145_i0 PRJNA526367 65355 151 6.401961 9.66696111 Fuligo septica 159720 Evosea other_Eukaryota 259 6.76e-65   NTclustered gi|381139266|emb|HE655083.1| 159720 g65145 i0 99.301 63.2649006622517 143 1 95 0 2 144 1235 1093 Fuligo septica partial 28S rRNA gene, isolate Mx-K28 blastn 9553 259 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Fuligo Fuligo septica
27772578 27772578 PRJNA526367_P_NODE_44084_length_176_cov_3.204724_g43874_i0 PRJNA526367 44084 176 3.204724 5.64031424 Acytostelium subglobosum LB1 1410327 Evosea other_Eukaryota 61.6 3.08e-9   NR XP_012748522.1 1410327 g43874 i0 60.7 2.88068181818182 56 22 95.5 0 6 173 228 283 XP_012748522.1 hypothetical protein SAMD00019534_116590, partial [Acytostelium subglobosum LB1] diamond 507 61.6 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;