RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA526367", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 4 ✖

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA526367 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8148945 8148945 PRJNA526367_P_NODE_31307_length_301_cov_7.829365_g31098_i0 PRJNA526367 31307 301 7.829365 23.56638865 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 424 5.15e-114   NTclustered gi|300078498|gb|GU001160.1| 5755 g31098 i0 92.667 3.23255813953488 300 12 97 8 4 294 6441 6143 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 973 424 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
13249814 13249814 PRJNA526367_P_NODE_35251_length_194_cov_20.448276_g35041_i0 PRJNA526367 35251 194 20.448276 39.66965544 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 241 3.3300000000000007e-59   NTclustered gi|300078498|gb|GU001160.1| 5755 g35041 i0 93.333 4.99484536082474 165 8 84 3 8 170 5765 5928 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 969 241 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
19621915 19621915 PRJNA526367_P_NODE_29776_length_324_cov_1.530909_g29567_i0 PRJNA526367 29776 324 1.530909 4.96014516 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 178 4.81e-40   NTclustered gi|300078498|gb|GU001160.1| 5755 g29567 i0 100 11.9783950617284 96 0 58 0 5 100 6926 6831 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 3881 178 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
20898098 20898098 PRJNA526367_P_NODE_36377_length_189_cov_6.100000_g36167_i0 PRJNA526367 36377 189 6.1 11.529 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 313 6.74e-81   NTclustered gi|300078498|gb|GU001160.1| 5755 g36167 i0 100 70.026455026455 169 0 89 0 21 189 7669 7501 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 13235 313 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;