RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA526367" and tax_clade = "Amoebozoa"

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tax_phylum 3

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 9 ✖

bioproject 1

  • PRJNA526367 · 9 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8148945 8148945 PRJNA526367_P_NODE_31307_length_301_cov_7.829365_g31098_i0 PRJNA526367 31307 301 7.829365 23.56638865 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 424 5.15e-114   NTclustered gi|300078498|gb|GU001160.1| 5755 g31098 i0 92.667 3.23255813953488 300 12 97 8 4 294 6441 6143 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 973 424 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
10699897 10699897 PRJNA526367_P_NODE_35509_length_192_cov_3.202797_g35299_i0 PRJNA526367 35509 192 3.202797 6.14937024 Entamoeba gingivalis 38877 Evosea other_Eukaryota 326 8.82e-85   NTclustered gi|2781670152|dbj|LC832224.1| 38877 g35299 i0 98.396 72.0885416666667 187 0 96 2 1 185 697 512 Entamoeba gingivalis ST1-1_human_Ishikawa_H118_2017 gene for 18S ribosomal RNA, partial sequence blastn 13841 326 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba gingivalis
13249814 13249814 PRJNA526367_P_NODE_35251_length_194_cov_20.448276_g35041_i0 PRJNA526367 35251 194 20.448276 39.66965544 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 241 3.3300000000000007e-59   NTclustered gi|300078498|gb|GU001160.1| 5755 g35041 i0 93.333 4.99484536082474 165 8 84 3 8 170 5765 5928 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 969 241 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
14525142 14525142 PRJNA526367_P_NODE_55132_length_163_cov_1.333333_g54922_i0 PRJNA526367 55132 163 1.333333 2.17333279 Echinostelium minutum 300235 Evosea other_Eukaryota 147 6.0599999999999996e-31   NTclustered gi|381139237|emb|HE655044.1| 300235 g54922 i0 90.265 62.9570552147239 113 9 69 2 7 118 817 706 Echinostelium minutum partial 28S rRNA gene, strain ATCC 22345 blastn 10262 147 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Echinosteliales Echinosteliidae Echinostelium Echinostelium minutum
17073280 17073280 PRJNA526367_P_NODE_40914_length_181_cov_5.356061_g40704_i0 PRJNA526367 40914 181 5.356061 9.69447041 Hyalosphenia papilio 318532 Tubulinea other_Eukaryota 315 1.78e-81   NTclustered gi|421976353|gb|JQ519493.1| 318532 g40704 i0 99.422 65.4696132596685 173 1 96 0 2 174 445 273 Hyalosphenia papilio clone JG11.46_f5 elongation factor 2 alpha gene, partial cds blastn 11850 315 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Hyalospheniidae Hyalosphenia Hyalosphenia papilio
18347905 18347905 PRJNA526367_P_NODE_65355_length_151_cov_6.401961_g65145_i0 PRJNA526367 65355 151 6.401961 9.66696111 Fuligo septica 159720 Evosea other_Eukaryota 259 6.76e-65   NTclustered gi|381139266|emb|HE655083.1| 159720 g65145 i0 99.301 63.2649006622517 143 1 95 0 2 144 1235 1093 Fuligo septica partial 28S rRNA gene, isolate Mx-K28 blastn 9553 259 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Fuligo Fuligo septica
19621915 19621915 PRJNA526367_P_NODE_29776_length_324_cov_1.530909_g29567_i0 PRJNA526367 29776 324 1.530909 4.96014516 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 178 4.81e-40   NTclustered gi|300078498|gb|GU001160.1| 5755 g29567 i0 100 11.9783950617284 96 0 58 0 5 100 6926 6831 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 3881 178 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
20898098 20898098 PRJNA526367_P_NODE_36377_length_189_cov_6.100000_g36167_i0 PRJNA526367 36377 189 6.1 11.529 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 313 6.74e-81   NTclustered gi|300078498|gb|GU001160.1| 5755 g36167 i0 100 70.026455026455 169 0 89 0 21 189 7669 7501 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 13235 313 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27772578 27772578 PRJNA526367_P_NODE_44084_length_176_cov_3.204724_g43874_i0 PRJNA526367 44084 176 3.204724 5.64031424 Acytostelium subglobosum LB1 1410327 Evosea other_Eukaryota 61.6 3.08e-9   NR XP_012748522.1 1410327 g43874 i0 60.7 2.88068181818182 56 22 95.5 0 6 173 228 283 XP_012748522.1 hypothetical protein SAMD00019534_116590, partial [Acytostelium subglobosum LB1] diamond 507 61.6 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;