RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA520845", tax_phylum = "Thermoproteota" and tax_superkingdom = "Archaea"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

  • Archaea · 3 ✖

tax_phylum 1

  • Thermoproteota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA520845 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19615246 19615246 PRJNA520845_P_NODE_176156_length_281_cov_1.110577_g174657_i0 PRJNA520845 176156 281 1.110577 3.12072137 Sulfurisphaera ohwakuensis 69656 Archaea Archaea 52.8 0.026   NTclustered gi|2759012589|dbj|AP031374.1| 69656 g174657 i0 100 0.099644128113879 28 0 10 0 16 43 2136976 2136949 Sulfurisphaera ohwakuensis YN1HA DNA, complete genome blastn 28 52.8 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Sulfurisphaera Sulfurisphaera ohwakuensis
29571818 29571818 PRJNA520845_P_NODE_221910_length_250_cov_0.870056_g220411_i0 PRJNA520845 221910 250 0.870056 2.17514 Candidatus Methanomethylicaceae archaeon 2282146 Archaea Archaea 72.4 6.41e-13   NR MDD1766530.1 2282146 g220411 i0 42.2 4.98 83 48 99.6 0 1 249 76 158 MDD1766530.1 slipin family protein [Candidatus Methanomethyliaceae archaeon] diamond 1245 72.4 1 Archaea   Thermoproteati Thermoproteota Methanosuratincolia Candidatus Methanomethylicales Candidatus Methanomethylicaceae   Candidatus Methanomethylicaceae archaeon
32826928 32826928 PRJNA520845_P_NODE_235720_length_247_cov_0.885057_g234221_i0 PRJNA520845 235720 247 0.885057 2.18609079 Thermoproteota archaeon 2056631 Archaea Archaea 60.5 2.29e-8   NR MDQ2686009.1 2056631 g234221 i0 37.8 0.995951417004049 82 50 98.4 1 4 246 60 141 MDQ2686009.1 reverse transcriptase family protein [Thermoproteota archaeon] diamond 246 60.5 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;