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contig_metadata

28 rows where bioproject = "PRJNA520845" and tax_phylum = "Thermodesulfobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 28 ✖

tax_kingdom 1

bioproject 1

  • PRJNA520845 · 28 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1764494 1764494 PRJNA520845_P_NODE_177202_length_280_cov_1.207729_g175703_i0 PRJNA520845 177202 280 1.207729 3.3816412 Geomonas subterranea 2847989 Bacteria Bacteria 52.8 0.026   NTclustered gi|2060227305|gb|CP077683.1| 2847989 g175703 i0 100 0.210714285714286 28 0 10 0 21 48 932247 932220 Geomonas subterranea strain RG2 chromosome, complete genome blastn 59 52.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geomonas Geomonas subterranea
5593975 5593975 PRJNA520845_P_NODE_211225_length_252_cov_2.022346_g209726_i0 PRJNA520845 211225 252 2.022346 5.09631192 Desulfovibrio sp. 86 2666132 Bacteria Bacteria 466 6.89e-127   NTclustered gi|1862956133|emb|LR738849.1| 2666132 g209726 i0 100 103 252 0 100 0 1 252 3245259 3245510 Desulfovibrio sp. 86 genome assembly, chromosome: DESU86 blastn 25956 466 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio sp. 86
14519241 14519241 PRJNA520845_P_NODE_216792_length_251_cov_0.865169_g215293_i0 PRJNA520845 216792 251 0.865169 2.17157419 Trichlorobacter lovleyi 313985 Bacteria Bacteria 58.4 4.89e-4   NTclustered gi|189419341|gb|CP001089.1| 398767 g215293 i0 100 0.239043824701195 31 0 12 0 201 231 2095406 2095436 Geobacter lovleyi SZ, complete genome blastn 60 58.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Trichlorobacter Trichlorobacter lovleyi
15793906 15793906 PRJNA520845_P_NODE_252293_length_244_cov_0.900585_g250794_i0 PRJNA520845 252293 244 0.900585 2.1974274 Pseudodesulfovibrio mercurii 641491 Bacteria Bacteria 52.8 0.022   NTclustered gi|365906293|gb|CP003220.1| 641491 g250794 i0 100 0.114754098360656 28 0 11 0 131 158 1010159 1010186 Pseudodesulfovibrio mercurii strain ND132 chromosome, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Pseudodesulfovibrio Pseudodesulfovibrio mercurii
18963398 18963398 PRJNA520845_P_NODE_260755_length_242_cov_0.911243_g259256_i0 PRJNA520845 260755 242 0.911243 2.20520806 Desulfosudis 2904716 Bacteria Bacteria 252 2e-62   NTclustered gi|158508843|gb|CP000859.1| 96561 g259256 i0 85.714 201.285123966942 245 28 100 6 1 242 684011 683771 Desulfococcus oleovorans Hxd3, complete genome blastn 48711 252 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfosudaceae Desulfosudis Desulfosudis oleivorans
19616251 19616251 PRJNA520845_P_NODE_212896_length_251_cov_1.370787_g211397_i0 PRJNA520845 212896 251 1.370787 3.44067537 Desulfuromonas versatilis 2802975 Bacteria Bacteria 52.8 0.023   NTclustered gi|2065532709|dbj|AP024355.1| 2802975 g211397 i0 100 0.111553784860558 28 0 11 0 62 89 390868 390841 Desulfuromonas versatilis NIT-T3 DNA, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Desulfuromonadaceae Desulfuromonas Desulfuromonas versatilis
26602223 26602223 PRJNA520845_P_NODE_253741_length_243_cov_1.358824_g252242_i0 PRJNA520845 253741 243 1.358824 3.30194232 Geomesophilobacter sediminis 2798584 Bacteria Bacteria 43.9 0.0137   NR WP_199382164.1 2798584 g252242 i0 36.1 0.888888888888889 72 40 81.5 2 40 237 177 248 WP_199382164.1 site-2 protease family protein [Geomesophilobacter sediminis] diamond 216 43.9 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geomesophilobacter Geomesophilobacter sediminis
26744016 26744016 PRJNA520845_P_NODE_141761_length_314_cov_0.987552_g140262_i0 PRJNA520845 141761 314 0.987552 3.10091328 Desulfuromonadia 3031651 Bacteria Bacteria 67.8 4.06e-11   NR MFO7832004.1 2099677 g140262 i0 64.8 2.63694267515924 54 18 51.6 1 132 293 40 92 MFO7832004.1 dNTP triphosphohydrolase [Desulfuromonadaceae bacterium] diamond 828 67.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Desulfuromonadaceae   Desulfuromonadaceae bacterium
27456726 27456726 PRJNA520845_P_NODE_243463_length_245_cov_1.668605_g241964_i0 PRJNA520845 243463 245 1.668605 4.08808225 Syntrophaceae bacterium 2052184 Bacteria Bacteria 60.1 2.96e-8   NR MEN6319972.1 2052184 g241964 i0 44.3 4.8734693877551 70 37 84.5 2 209 3 531 599 MEN6319972.1 chromosome condensation regulator RCC1 [Syntrophaceae bacterium] diamond 1194 60.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales Syntrophaceae   Syntrophaceae bacterium
27488123 27488123 PRJNA520845_P_NODE_210323_length_253_cov_1.600000_g208824_i0 PRJNA520845 210323 253 1.6 4.048 Syntrophales bacterium 2928017 Bacteria Bacteria 53.1 1.65e-6   NR MDD5169388.1 2928017 g208824 i0 57.9 0.948616600790514 38 16 45.1 0 117 4 45 82 MDD5169388.1 RidA family protein [Syntrophales bacterium] diamond 240 53.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales     Syntrophales bacterium
27709497 27709497 PRJNA520845_P_NODE_143644_length_312_cov_0.878661_g142145_i0 PRJNA520845 143644 312 0.878661 2.74142232 Trichlorobacter thiogenes 115783 Bacteria Bacteria 56.6 1.13e-6   NR WP_078791311.1 115783 g142145 i0 58.7 3.75 46 18 43.3 1 272 138 618 663 WP_078791311.1 6-bladed beta-propeller [Trichlorobacter thiogenes] diamond 1170 56.6 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Trichlorobacter Trichlorobacter thiogenes
27930112 27930112 PRJNA520845_P_NODE_214585_length_251_cov_0.865169_g213086_i0 PRJNA520845 214585 251 0.865169 2.17157419 Desulfobacteraceae bacterium 2049433 Bacteria Bacteria 52.8 1.13e-5   NR MFP3912908.1 2049433 g213086 i0 36.3 1.08764940239044 91 50 99.2 3 249 1 129 219 MFP3912908.1 C1 family peptidase [Desulfobacteraceae bacterium] diamond 273 52.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae   Desulfobacteraceae bacterium
28498677 28498677 PRJNA520845_P_NODE_97347_length_377_cov_0.723684_g95848_i0 PRJNA520845 97347 377 0.723684 2.72828868 Desulfovermiculus sp. 2821143 Bacteria Bacteria 175 3.11e-54   NR MFO7802529.1 2821143 g95848 i0 100 0.660477453580902 83 0 66 0 3 251 20 102 MFO7802529.1 hypothetical protein [Desulfovermiculus sp.] diamond 249 175 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfohalobiaceae Desulfovermiculus Desulfovermiculus sp.
28561710 28561710 PRJNA520845_P_NODE_223767_length_249_cov_0.903409_g222268_i0 PRJNA520845 223767 249 0.903409 2.24948841 Desulfobulbaceae bacterium 2053307 Bacteria Bacteria 42.7 0.039   NR MDW7771268.1 2053307 g222268 i0 38.8 0.807228915662651 67 36 79.5 3 7 204 224 286 MDW7771268.1 hypothetical protein [Desulfobulbaceae bacterium] diamond 201 42.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae   Desulfobulbaceae bacterium
28719473 28719473 PRJNA520845_P_NODE_120347_length_340_cov_1.352060_g118848_i0 PRJNA520845 120347 340 1.35206 4.597004 Syntrophales bacterium 2928017 Bacteria Bacteria 97.1 8.430000000000001e-21   NR HYA14554.1 2928017 g118848 i0 48.3 0.785294117647059 89 45 78.5 1 2 268 296 383 HYA14554.1 OmpH family outer membrane protein [Syntrophales bacterium] diamond 267 97.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales     Syntrophales bacterium
28940711 28940711 PRJNA520845_P_NODE_269888_length_227_cov_2.590909_g268389_i0 PRJNA520845 269888 227 2.590909 5.88136343 Syntrophus sp. SKADARSKE-3 3029837 Bacteria Bacteria 118 4.01e-30   NR MDQ5984429.1 3029837 g268389 i0 75.7 17.6563876651982 74 18 97.8 0 5 226 214 287 MDQ5984429.1 Acetyl-CoA acetyltransferase [Syntrophus sp. SKADARSKE-3] diamond 4008 118 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales Syntrophaceae Syntrophus Syntrophus sp. SKADARSKE-3
29066923 29066923 PRJNA520845_P_NODE_260148_length_242_cov_0.911243_g258649_i0 PRJNA520845 260148 242 0.911243 2.20520806 Desulfosudis oleivorans 181663 Bacteria Bacteria 57.8 1.8e-7   NR WP_012174578.1 181663 g258649 i0 44.4 0.78099173553719 63 35 78.1 0 198 10 136 198 WP_012174578.1 ankyrin repeat domain-containing protein [Desulfosudis oleivorans] diamond 189 57.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfosudaceae Desulfosudis Desulfosudis oleivorans
30045486 30045486 PRJNA520845_P_NODE_173591_length_283_cov_1.100000_g172092_i0 PRJNA520845 173591 283 1.1 3.113 Desulfovibrio sp. 885 Bacteria Bacteria 53.1 1.31e-5   NR MBI4804009.1 885 g172092 i0 50 0.551236749116608 52 25 55.1 1 25 180 321 371 MBI4804009.1 GGDEF domain-containing protein [Desulfovibrio sp.] diamond 156 53.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio sp.
30614266 30614266 PRJNA520845_P_NODE_210113_length_253_cov_1.711111_g208614_i0 PRJNA520845 210113 253 1.711111 4.32911083 Syntrophaceae bacterium 2052184 Bacteria Bacteria 45.8 2.66e-4   NR MDR3604296.1 2052184 g208614 i0 46.7 1.64822134387352 45 24 53.4 0 7 141 11 55 MDR3604296.1 ankyrin repeat domain-containing protein [Syntrophaceae bacterium] diamond 417 45.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales Syntrophaceae   Syntrophaceae bacterium
31436066 31436066 PRJNA520845_P_NODE_245076_length_245_cov_0.895349_g243577_i0 PRJNA520845 245076 245 0.895349 2.19360505 Desulfobacula sp. 2593537 Bacteria Bacteria 49.3 1.84e-4   NR MCD4677405.1 2593537 g243577 i0 46.4 1.82448979591837 56 25 64.9 2 242 84 24 77 MCD4677405.1 PEGA domain-containing protein [Desulfobacula sp.] diamond 447 49.3 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae Desulfobacula Desulfobacula sp.
31436078 31436078 PRJNA520845_P_NODE_262076_length_242_cov_0.911243_g260577_i0 PRJNA520845 262076 242 0.911243 2.20520806 Desulfovibrionales bacterium 2448050 Bacteria Bacteria 75.1 1.48e-13   NR MDK2954721.1 2448050 g260577 i0 45.2 1.8099173553719 73 40 90.5 0 242 24 882 954 MDK2954721.1 two-component system, sensor histidine kinase and response regulator [Desulfovibrionales bacterium] diamond 438 75.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales     Desulfovibrionales bacterium
31625832 31625832 PRJNA520845_P_NODE_205916_length_257_cov_1.250000_g204417_i0 PRJNA520845 205916 257 1.25 3.2125 Desulfatirhabdium butyrativorans 340467 Bacteria Bacteria 59.3 6.3e-8   NR WP_028323589.1 340467 g204417 i0 38.3 2.83657587548638 81 48 94.6 1 243 1 69 147 WP_028323589.1 hypothetical protein [Desulfatirhabdium butyrativorans] diamond 729 59.3 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfatirhabdiaceae Desulfatirhabdium Desulfatirhabdium butyrativorans
31752301 31752301 PRJNA520845_P_NODE_220077_length_250_cov_0.870056_g218578_i0 PRJNA520845 220077 250 0.870056 2.17514 Desulfococcaceae bacterium 3024398 Bacteria Bacteria 62.4 3.45e-9   NR MFP4308123.1 3024398 g218578 i0 48.8 0.984 82 36 94.8 2 249 13 44 122 MFP4308123.1 pyrroline-5-carboxylate reductase [Desulfococcaceae bacterium] diamond 246 62.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfococcaceae   Desulfococcaceae bacterium
31767679 31767679 PRJNA520845_P_NODE_235157_length_247_cov_0.885057_g233658_i0 PRJNA520845 235157 247 0.885057 2.18609079 Pseudomonadati 3379134 Bacteria Bacteria 47 0.00106   NR RUM92003.1 1874629 g233658 i0 43.1 1.76113360323887 51 26 61.9 1 175 23 197 244 RUM92003.1 MAG: hypothetical protein DSZ23_01130 [Thermodesulfatator sp.] diamond 435 47 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Thermodesulfobacteria Thermodesulfobacteriales Thermodesulfatatoraceae Thermodesulfatator Thermodesulfatator sp.
31973860 31973860 PRJNA520845_P_NODE_230218_length_248_cov_0.880000_g228719_i0 PRJNA520845 230218 248 0.88 2.1824 Desulforhopalus sp. 2099376 Bacteria Bacteria 43.1 0.0277   NR MDK9706549.1 2099376 g228719 i0 39.1 0.834677419354839 69 38 78.6 2 52 246 110 178 MDK9706549.1 DUF362 domain-containing protein [Desulforhopalus sp.] diamond 207 43.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfocapsaceae Desulforhopalus Desulforhopalus sp.
32258935 32258935 PRJNA520845_P_NODE_110078_length_355_cov_1.085106_g108579_i0 PRJNA520845 110078 355 1.085106 3.8521263 Desulfovermiculus sp. 2821143 Bacteria Bacteria 48.1 2.39e-4   NR MFO7802529.1 2821143 g108579 i0 100 0.169014084507042 20 0 16.9 0 295 354 1 20 MFO7802529.1 hypothetical protein [Desulfovermiculus sp.] diamond 60 48.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfohalobiaceae Desulfovermiculus Desulfovermiculus sp.
32700833 32700833 PRJNA520845_P_NODE_262560_length_242_cov_0.911243_g261061_i0 PRJNA520845 262560 242 0.911243 2.20520806 Deferrisoma camini 1035120 Bacteria Bacteria 42.4 0.0378   NR WP_025321177.1 1035120 g261061 i0 47.4 0.471074380165289 38 20 47.1 0 135 22 106 143 WP_025321177.1 ABC-type transport auxiliary lipoprotein family protein [Deferrisoma camini] diamond 114 42.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Deferrisomatia Deferrisomatales Deferrisomataceae Deferrisoma Deferrisoma camini
32763913 32763913 PRJNA520845_P_NODE_74000_length_432_cov_1.281337_g72501_i0 PRJNA520845 74000 432 1.281337 5.53537584 Geopsychrobacteraceae bacterium 3065857 Bacteria Bacteria 64.7 5.2e-9   NR HKJ05356.1 3065857 g72501 i0 56.6 1.84027777777778 53 22 36.8 1 160 2 296 347 HKJ05356.1 type III PLP-dependent enzyme [Geopsychrobacteraceae bacterium] diamond 795 64.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Geopsychrobacteraceae   Geopsychrobacteraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;