RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where bioproject = "PRJNA520845", tax_kingdom = "Methanobacteriati" and tax_phylum = "Thermoplasmatota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Thermoplasmatota · 7 ✖

tax_kingdom 1

  • Methanobacteriati · 7 ✖

bioproject 1

  • PRJNA520845 · 7 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26855999 26855999 PRJNA520845_P_NODE_213961_length_251_cov_0.865169_g212462_i0 PRJNA520845 213961 251 0.865169 2.17157419 Thermoplasmata archaeon 1906666 Archaea Archaea 43.5 0.0223   NR HZY70575.1 1906666 g212462 i0 46.8 0.561752988047809 47 21 56.2 2 237 97 615 657 HZY70575.1 aconitate hydratase AcnA [Thermoplasmata archaeon] diamond 141 43.5 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon
28024925 28024925 PRJNA520845_P_NODE_244265_length_245_cov_0.895349_g242766_i0 PRJNA520845 244265 245 0.895349 2.19360505 Thermoplasmata archaeon 1906666 Archaea Archaea 53.5 3.44e-6   NR MCI0497549.1 1906666 g242766 i0 39 1.00408163265306 82 41 94.3 2 244 14 10 87 MCI0497549.1 GDSL-type esterase/lipase family protein [Thermoplasmata archaeon] diamond 246 53.5 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon
28530122 28530122 PRJNA520845_P_NODE_165107_length_289_cov_2.578704_g163608_i0 PRJNA520845 165107 289 2.578704 7.45245456 Candidatus Methanomethylophilaceae archaeon 2517205 Archaea Archaea 42.7 0.0319   NR MBP5734334.1 2517205 g163608 i0 31.5 1.12110726643599 54 37 56.1 0 1 162 14 67 MBP5734334.1 hypothetical protein [Candidatus Methanomethylophilaceae archaeon] diamond 324 42.7 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales Methanomethylophilaceae   Candidatus Methanomethylophilaceae archaeon
30045495 30045495 PRJNA520845_P_NODE_182231_length_276_cov_1.211823_g180732_i0 PRJNA520845 182231 276 1.211823 3.34463148 Thermoplasmata archaeon 1906666 Archaea Archaea 121 1.43e-31   NR MFP4050406.1 1906666 g180732 i0 61.8 1.91304347826087 89 32 96.7 1 8 274 124 210 MFP4050406.1 adenylate kinase family protein [Thermoplasmata archaeon] diamond 528 121 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon
30993591 30993591 PRJNA520845_P_NODE_181214_length_277_cov_1.132353_g179715_i0 PRJNA520845 181214 277 1.132353 3.13661781 Thermoplasmata archaeon 1906666 Archaea Archaea 65.9 3.45e-10   NR MCD6276010.1 1906666 g179715 i0 43.8 0.963898916967509 89 46 96.4 2 268 2 50 134 MCD6276010.1 bis-aminopropyl spermidine synthase family protein [Thermoplasmata archaeon] diamond 267 65.9 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon
32147495 32147495 PRJNA520845_P_NODE_38558_length_609_cov_1.615672_g37090_i0 PRJNA520845 38558 609 1.615672 9.83944248 Archaea 2157 Archaea Archaea 201 4.29e-59   NR PKK86187.1 2013852 g37090 i0 50 4.82758620689655 198 91 95.6 3 25 606 1 194 PKK86187.1 MAG: ATPase [Thermoplasmata archaeon HGW-Thermoplasmata-1] diamond 2940 201 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon HGW-Thermoplasmata-1
32448673 32448673 PRJNA520845_P_NODE_109999_length_355_cov_1.092199_g108500_i0 PRJNA520845 109999 355 1.092199 3.87730645 Candidatus Thalassarchaeaceae archaeon 2670411 Archaea Archaea 74.3 1.04e-12   NR MDP6906002.1 2670411 g108500 i0 42.5 0.676056338028169 80 46 67.6 0 99 338 319 398 MDP6906002.1 M20/M25/M40 family metallo-hydrolase [Candidatus Thalassarchaeaceae archaeon] diamond 240 74.3 1 Archaea   Methanobacteriati Thermoplasmatota Candidatus Poseidoniia Candidatus Poseidoniales Candidatus Thalassarchaeaceae   Candidatus Thalassarchaeaceae archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;