RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where bioproject = "PRJNA520845", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Bacteria · 8 ✖

tax_clade 1

  • delta/epsilon subdivisions · 8 ✖

bioproject 1

  • PRJNA520845 · 8 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27013981 27013981 PRJNA520845_P_NODE_38442_length_610_cov_1.700186_g36976_i0 PRJNA520845 38442 610 1.700186 10.3711346 uncultured delta proteobacterium HF 34034 Bacteria Bacteria 48.5 0.00155   NR ADI19205.1 710829 g36976 i0 60 0.147540983606557 30 12 14.8 0 439 528 63 92 ADI19205.1 hypothetical protein [uncultured delta proteobacterium HF0130_20J24] diamond 90 48.5 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium HF0130_20J24
27866875 27866875 PRJNA520845_P_NODE_6285_length_1538_cov_6.242321_g5622_i0 PRJNA520845 6285 1538 6.242321 96.00689698 Lujinxingia litoralis 2211119 Bacteria Bacteria 55.1 2.59e-4   NR WP_158542511.1 2211119 g5622 i0 40.6 0.308192457737321 69 35 12.3 2 3 191 54 122 WP_158542511.1 OmpA family protein [Lujinxingia litoralis] diamond 474 55.1 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Lujinxingiaceae Lujinxingia Lujinxingia litoralis
27993365 27993365 PRJNA520845_P_NODE_222845_length_249_cov_1.750000_g221346_i0 PRJNA520845 222845 249 1.75 4.3575 Lujinxingia litoralis 2211119 Bacteria Bacteria 53.5 6.43e-6   NR WP_111728921.1 2211119 g221346 i0 37.1 1.74698795180723 70 37 84.3 2 5 214 9 71 WP_111728921.1 PPC domain-containing protein [Lujinxingia litoralis] diamond 435 53.5 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Lujinxingiaceae Lujinxingia Lujinxingia litoralis
28119564 28119564 PRJNA520845_P_NODE_61505_length_475_cov_1.393035_g60007_i0 PRJNA520845 61505 475 1.393035 6.61691625 Microvenator marinus 2600177 Bacteria Bacteria 55.5 1.4e-5   NR WP_146962556.1 2600177 g60007 i0 56.3 0.303157894736842 48 19 30.3 1 209 66 356 401 WP_146962556.1 hypothetical protein [Microvenator marinus] diamond 144 55.5 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Microvenatoraceae Microvenator Microvenator marinus
28340593 28340593 PRJNA520845_P_NODE_268726_length_236_cov_2.061350_g267227_i0 PRJNA520845 268726 236 2.06135 4.864786 Bradymonadales bacterium 2099667 Bacteria Bacteria 49.7 1.14e-4   NR MBN1945519.1 2099667 g267227 i0 52.4 1.57627118644068 42 17 53.4 1 223 98 9 47 MBN1945519.1 DUF4215 domain-containing protein [Bradymonadales bacterium] diamond 372 49.7 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales     Bradymonadales bacterium
31182878 31182878 PRJNA520845_P_NODE_80035_length_415_cov_1.505848_g78536_i0 PRJNA520845 80035 415 1.505848 6.2492692 SAR324 cluster bacterium 2024889 Bacteria Bacteria 160 1.33e-47   NR HJL95153.1 2024889 g78536 i0 58.6 3.84578313253012 133 53 94.7 1 1 393 23 155 HJL95153.1 hypothetical protein [SAR324 cluster bacterium] diamond 1596 160 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium
31830804 31830804 PRJNA520845_P_NODE_216197_length_251_cov_0.865169_g214698_i0 PRJNA520845 216197 251 0.865169 2.17157419 Pseudomonadota 1224 Bacteria Bacteria 80.5 2.07e-16   NR CAB1063070.1 698986 g214698 i0 53.8 2.84462151394422 80 36 94.4 1 238 2 2 81 CAB1063070.1 hypothetical protein D1BOALGB6SA_7853 [Olavius sp. associated proteobacterium Delta 1] diamond 714 80.5 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Olavius sp. associated proteobacterium Delta 1
32732603 32732603 PRJNA520845_P_NODE_256840_length_243_cov_0.905882_g255341_i0 PRJNA520845 256840 243 0.905882 2.20129326 Deltaproteobacteria bacterium ADurb.Bin2 2026735 Bacteria Bacteria 91.3 3.05e-19   NR OQB17715.1 1852869 g255341 i0 55.3 0.938271604938272 76 34 93.8 0 230 3 500 575 OQB17715.1 MAG: hypothetical protein BWY17_00711 [Deltaproteobacteria bacterium ADurb.Bin207] diamond 228 91.3 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium ADurb.Bin207

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;