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contig_metadata

33 rows where bioproject = "PRJNA520845", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 33 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 33 ✖

bioproject 1

  • PRJNA520845 · 33 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
489812 489812 PRJNA520845_P_NODE_200661_length_261_cov_1.361702_g199162_i0 PRJNA520845 200661 261 1.361702 3.55404222 Oleiharenicola sp. Vm1 3398393 Bacteria Bacteria 350 7.539999999999999e-92   NTclustered gi|2912653302|gb|CP180537.1| 3398393 g199162 i0 90.805 15.8812260536398 261 24 100 0 1 261 3253576 3253316 Oleiharenicola sp. Vm1 chromosome, complete genome blastn 4145 350 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Oleiharenicola Oleiharenicola sp. Vm1
1765445 1765445 PRJNA520845_P_NODE_214042_length_251_cov_0.865169_g212543_i0 PRJNA520845 214042 251 0.865169 2.17157419 Akkermansia muciniphila 239935 Bacteria Bacteria 464 2.47e-126   NTclustered gi|1888387165|gb|CP058562.1| 239935 g212543 i0 100 16.1115537848606 251 0 100 0 1 251 1836756 1836506 Akkermansia muciniphila strain AK32 chromosome, complete genome blastn 4044 464 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia muciniphila
3040414 3040414 PRJNA520845_P_NODE_183203_length_275_cov_1.524752_g181704_i0 PRJNA520845 183203 275 1.524752 4.193068 Verrucomicrobium sp. GAS474 1882831 Bacteria Bacteria 76.8 1.5e-9   NTclustered gi|1085974270|emb|LT629781.1| 1882831 g181704 i0 91.071 0.549090909090909 56 5 21 0 130 185 869768 869713 Verrucomicrobiaceae bacterium GAS474 genome assembly, chromosome: I blastn 151 76.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Verrucomicrobium Verrucomicrobium sp. GAS474
11969765 11969765 PRJNA520845_P_NODE_243110_length_245_cov_2.412791_g241611_i0 PRJNA520845 243110 245 2.412791 5.91133795 Akkermansia muciniphila 239935 Bacteria Bacteria 453 5.1900000000000006e-123   NTclustered gi|2756360508|gb|CP156688.1| 239935 g241611 i0 100 100 245 0 100 0 1 245 2505602 2505846 Akkermansia muciniphila strain AKK-TMU chromosome, complete genome blastn 24500 453 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia muciniphila
15794205 15794205 PRJNA520845_P_NODE_263233_length_241_cov_1.833333_g261734_i0 PRJNA520845 263233 241 1.833333 4.41833253 Pseudomonadati 3379134 Bacteria Bacteria 129 4.9e-33   NR MBI4025168.1 2026799 g261734 i0 74 8.73858921161826 77 20 95.9 0 10 240 332 408 MBI4025168.1 aldehyde dehydrogenase family protein [Verrucomicrobiota bacterium] diamond 2106 130 0.992307692307692 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
22168218 22168218 PRJNA520845_P_NODE_259898_length_242_cov_0.911243_g258399_i0 PRJNA520845 259898 242 0.911243 2.20520806 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 63.2 2.21e-9   NR SPE62276.1 2026799 g258399 i0 75.6 0.508264462809917 41 10 50.8 0 119 241 23 63 SPE62276.1 Alanine dehydrogenase [Verrucomicrobiota bacterium] diamond 123 63.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
26602240 26602240 PRJNA520845_P_NODE_41601_length_584_cov_1.506849_g40123_i0 PRJNA520845 41601 584 1.506849 8.79999816 Chthoniobacteraceae bacterium 2811408 Bacteria Bacteria 52.8 3.03e-4   NR MDD5348701.1 2811408 g40123 i0 30.4 0.863013698630137 168 106 81.7 4 512 36 569 734 MDD5348701.1 autotransporter-associated beta strand repeat-containing protein [Chthoniobacteraceae bacterium] diamond 504 52.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae   Chthoniobacteraceae bacterium
26634101 26634101 PRJNA520845_P_NODE_62741_length_470_cov_1.637280_g61242_i0 PRJNA520845 62741 470 1.63728 7.695216 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 57 4.13e-6   NR MEY2439752.1 2026799 g61242 i0 40.2 0.523404255319149 82 42 47.9 2 13 237 364 445 MEY2439752.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 246 57 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
26934368 26934368 PRJNA520845_P_NODE_180342_length_277_cov_1.887255_g178843_i0 PRJNA520845 180342 277 1.887255 5.22769635 root 1 Root_unresolved Root_unresolved 59.7 6.08e-8   NR RYD28447.1 2026800 g178843 i0 46.2 5.72924187725632 52 28 56.3 0 276 121 11 62 RYD28447.1 MAG: hypothetical protein EOP86_23075, partial [Verrucomicrobiaceae bacterium] diamond 1587 59.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
27045741 27045741 PRJNA520845_P_NODE_268422_length_237_cov_4.048780_g266923_i0 PRJNA520845 268422 237 4.04878 9.5956086 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 42.4 0.0477   NR SPE54920.1 2026799 g266923 i0 44.9 0.620253164556962 49 25 62 1 39 185 461 507 SPE54920.1 hypothetical protein SBV1_1980011 [Verrucomicrobiota bacterium] diamond 147 42.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
27361949 27361949 PRJNA520845_P_NODE_142103_length_313_cov_1.854167_g140604_i0 PRJNA520845 142103 313 1.854167 5.80354271 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 87.8 6.75e-19   NR MCS7338875.1 2499141 g140604 i0 48.8 1.57188498402556 82 41 78.6 1 67 312 101 181 MCS7338875.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP [Verrucomicrobiia bacterium] diamond 492 87.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
28071609 28071609 PRJNA520845_P_NODE_194885_length_266_cov_1.196891_g193386_i0 PRJNA520845 194885 266 1.196891 3.18373006 Bacteria 2 Bacteria Bacteria 113 8.51e-27   NR WP_007415882.1 1032527 g193386 i0 55.2 14.593984962406 87 39 98.1 0 263 3 990 1076 WP_007415882.1 hypothetical protein [Pedosphaera parvula] diamond 3882 114 0.991228070175439 Bacteria PVC group Pseudomonadati Verrucomicrobiota Pedosphaerae Pedosphaerales Pedosphaeraceae Pedosphaera Pedosphaera parvula
28119516 28119516 PRJNA520845_P_NODE_223685_length_249_cov_1.125000_g222186_i0 PRJNA520845 223685 249 1.125 2.80125 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 41.6 0.033   NR MEC9131220.1 2026799 g222186 i0 35.8 0.63855421686747 53 34 63.9 0 235 77 57 109 MEC9131220.1 tetratricopeptide repeat protein [Verrucomicrobiota bacterium] diamond 159 41.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
28656382 28656382 PRJNA520845_P_NODE_167107_length_288_cov_1.186047_g165608_i0 PRJNA520845 167107 288 1.186047 3.41581536 Verrucomicrobiales bacterium 2026801 Bacteria Bacteria 55.5 1.35e-6   NR HAL05285.1 2026801 g165608 i0 33.6 4.52083333333333 107 58 97.9 3 283 2 24 130 HAL05285.1 molecular chaperone DnaJ [Verrucomicrobiales bacterium] diamond 1302 55.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium
28972164 28972164 PRJNA520845_P_NODE_239688_length_246_cov_0.890173_g238189_i0 PRJNA520845 239688 246 0.890173 2.18982558 Terrimicrobiaceae bacterium 2832348 Bacteria Bacteria 154 8.8e-45   NR HEU4679260.1 2832348 g238189 i0 91.4 0.98780487804878 81 7 98.8 0 245 3 43 123 HEU4679260.1 sigma-70 family RNA polymerase sigma factor [Terrimicrobiaceae bacterium] diamond 243 154 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Terrimicrobiia Terrimicrobiales Terrimicrobiaceae   Terrimicrobiaceae bacterium
29476869 29476869 PRJNA520845_P_NODE_123570_length_336_cov_1.053232_g122071_i0 PRJNA520845 123570 336 1.053232 3.53885952 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 130 1.2499999999999998e-32   NR RYD77759.1 2026800 g122071 i0 61.3 0.991071428571429 111 43 99.1 0 1 333 221 331 RYD77759.1 MAG: hypothetical protein EOP84_15150, partial [Verrucomicrobiaceae bacterium] diamond 333 130 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
29540265 29540265 PRJNA520845_P_NODE_231550_length_248_cov_0.880000_g230051_i0 PRJNA520845 231550 248 0.88 2.1824 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 57 3.71e-7   NR MBE0545303.1 2026799 g230051 i0 45.5 0.931451612903226 77 35 93.1 2 236 6 57 126 MBE0545303.1 heparinase II/III family protein [Verrucomicrobiota bacterium] diamond 231 57 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
29792842 29792842 PRJNA520845_P_NODE_31411_length_679_cov_1.841584_g29973_i0 PRJNA520845 31411 679 1.841584 12.50435536 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 98.6 1.39e-19   NR MBS0659565.1 2026799 g29973 i0 34.8 1.01620029455081 230 125 95.9 11 654 4 1325 1542 MBS0659565.1 HYR domain-containing protein [Verrucomicrobiota bacterium] diamond 690 98.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
29934815 29934815 PRJNA520845_P_NODE_172411_length_284_cov_1.052133_g170912_i0 PRJNA520845 172411 284 1.052133 2.98805772 Bacteria 2 Bacteria Bacteria 122 6.879999999999999e-31   NR MDQ3199914.1 2026799 g170912 i0 61.7 4.96478873239437 94 36 99.3 0 3 284 258 351 MDQ3199914.1 fumarylacetoacetase [Verrucomicrobiota bacterium] diamond 1410 122 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
29982476 29982476 PRJNA520845_P_NODE_217251_length_251_cov_0.865169_g215752_i0 PRJNA520845 217251 251 0.865169 2.17157419 Opitutaceae bacterium 2006848 Bacteria Bacteria 70.9 5.12e-12   NR MBC8011822.1 2006848 g215752 i0 52.4 0.9800796812749 82 24 87.3 4 237 19 47 122 MBC8011822.1 tetratricopeptide repeat protein [Opitutaceae bacterium] diamond 246 70.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
29982498 29982498 PRJNA520845_P_NODE_247331_length_245_cov_0.895349_g245832_i0 PRJNA520845 247331 245 0.895349 2.19360505 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 58.2 1.38e-7   NR MCD6339197.1 2026799 g245832 i0 51.9 0.661224489795918 54 25 66.1 1 229 68 106 158 MCD6339197.1 DegQ family serine endoprotease [Verrucomicrobiota bacterium] diamond 162 58.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
30267250 30267250 PRJNA520845_P_NODE_99432_length_373_cov_1.270000_g97933_i0 PRJNA520845 99432 373 1.27 4.7371 Opitutaceae bacterium 2006848 Bacteria Bacteria 53.5 2.78e-5   NR HXB01788.1 2006848 g97933 i0 35.8 1.75335120643432 109 62 86.9 2 43 366 855 956 HXB01788.1 chitobiase/beta-hexosaminidase C-terminal domain-containing protein [Opitutaceae bacterium] diamond 654 53.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
30425240 30425240 PRJNA520845_P_NODE_177113_length_280_cov_1.289855_g175614_i0 PRJNA520845 177113 280 1.289855 3.611594 Chthoniobacterales bacterium 2201154 Bacteria Bacteria 63.9 1.9e-9   NR MFL6516445.1 2201154 g175614 i0 35.8 0.867857142857143 81 49 86.8 2 263 21 218 295 MFL6516445.1 choice-of-anchor tandem repeat GloVer-containing protein [Chthoniobacterales bacterium] diamond 243 63.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales     Chthoniobacterales bacterium
30488049 30488049 PRJNA520845_P_NODE_224613_length_249_cov_0.875000_g223114_i0 PRJNA520845 224613 249 0.875 2.17875 Opitutaceae bacterium 2006848 Bacteria Bacteria 53.5 6.21e-6   NR HXA80404.1 2006848 g223114 i0 44 0.903614457831325 75 41 89.2 1 22 243 13 87 HXA80404.1 chitobiase/beta-hexosaminidase C-terminal domain-containing protein [Opitutaceae bacterium] diamond 225 53.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
30566227 30566227 PRJNA520845_P_NODE_26153_length_751_cov_1.883481_g24761_i0 PRJNA520845 26153 751 1.883481 14.14494231 PVC group 1783257 Bacteria Bacteria 88.2 8.59e-16   NR WP_200282473.1 490093 g24761 i0 30.4 5.47669773635153 227 143 85.5 6 3 644 683 907 WP_200282473.1 isoleucine--tRNA ligase [Haloferula rosea] diamond 4113 88.6 0.99548532731377 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Haloferula Haloferula rosea
30740758 30740758 PRJNA520845_P_NODE_265734_length_241_cov_0.916667_g264235_i0 PRJNA520845 265734 241 0.916667 2.20916747 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 87.4 4.29e-18   NR RKX32204.1 2026799 g264235 i0 55.4 0.921161825726141 74 33 92.1 0 223 2 21 94 RKX32204.1 MAG: ADP-forming succinate--CoA ligase subunit beta [Verrucomicrobiota bacterium] diamond 222 87.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31103510 31103510 PRJNA520845_P_NODE_261055_length_242_cov_0.911243_g259556_i0 PRJNA520845 261055 242 0.911243 2.20520806 Bacteria 2 Bacteria Bacteria 51.2 3.79e-5   NR MBI3849790.1 2026799 g259556 i0 41.8 1.46280991735537 55 32 68.2 0 172 8 542 596 MBI3849790.1 serine/threonine protein kinase [Verrucomicrobiota bacterium] diamond 354 51.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31499538 31499538 PRJNA520845_P_NODE_231936_length_248_cov_0.880000_g230437_i0 PRJNA520845 231936 248 0.88 2.1824 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 90.1 7.94e-19   NR MBI5818279.1 2026799 g230437 i0 58.5 4.99596774193548 82 34 99.2 0 247 2 265 346 MBI5818279.1 adenylosuccinate synthetase [Verrucomicrobiota bacterium] diamond 1239 90.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31894220 31894220 PRJNA520845_P_NODE_186557_length_272_cov_2.321608_g185058_i0 PRJNA520845 186557 272 2.321608 6.31477376 PVC group 1783257 Bacteria Bacteria 48.1 6.95e-4   NR MDX1950577.1 2026799 g185058 i0 40.9 3.90441176470588 88 43 94.9 2 272 15 2402 2482 MDX1950577.1 Calx-beta domain-containing protein [Verrucomicrobiota bacterium] diamond 1062 48.5 0.991752577319588 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
32480329 32480329 PRJNA520845_P_NODE_257659_length_243_cov_0.905882_g256160_i0 PRJNA520845 257659 243 0.905882 2.20129326 Verrucomicrobiales bacterium 2026801 Bacteria Bacteria 50.8 5.25e-5   NR MBL9159727.1 2026801 g256160 i0 58.7 1.16049382716049 46 14 55.6 2 15 149 1273 1314 MBL9159727.1 autotransporter-associated beta strand repeat-containing protein [Verrucomicrobiales bacterium] diamond 282 50.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium
32558990 32558990 PRJNA520845_P_NODE_269079_length_233_cov_2.681250_g267580_i0 PRJNA520845 269079 233 2.68125 6.2473125 PVC group 1783257 Bacteria Bacteria 47.4 7.64e-4   NR MDO5450494.1 1872421 g267580 i0 75 2.16309012875536 28 7 36.1 0 107 190 249 276 MDO5450494.1 hypothetical protein [Akkermansia sp.] diamond 504 47.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia sp.
32669383 32669383 PRJNA520845_P_NODE_254500_length_243_cov_0.905882_g253001_i0 PRJNA520845 254500 243 0.905882 2.20129326 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 50.4 7.04e-5   NR MCX7825713.1 2499141 g253001 i0 46.6 0.716049382716049 58 29 69.1 1 187 20 33 90 MCX7825713.1 M60 family metallopeptidase [Verrucomicrobiia bacterium] diamond 174 50.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
32669388 32669388 PRJNA520845_P_NODE_260740_length_242_cov_0.911243_g259241_i0 PRJNA520845 260740 242 0.911243 2.20520806 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 134 3e-34   NR MCW5554562.1 2499141 g259241 i0 80.5 0.954545454545455 77 15 95.5 0 232 2 12 88 MCW5554562.1 hypothetical protein [Verrucomicrobiia bacterium] diamond 231 134 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;