RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA520845" and tax_clade = "PS1 clade"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • PS1 clade · 1 ✖

bioproject 1

  • PRJNA520845 · 1 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29649980 29649980 PRJNA520845_P_NODE_204190_length_258_cov_1.545946_g202691_i0 PRJNA520845 204190 258 1.545946 3.98854068 Parvibaculum 256616 Bacteria Bacteria 109 4.11e-27   NR EJW22026.1 1220535 g202691 i0 53.6 1.88372093023256 84 39 97.7 0 254 3 3 86 EJW22026.1 hypothetical protein IMCC14465_04200 [alpha proteobacterium IMCC14465] diamond 486 110 0.990909090909091 Bacteria PS1 clade Pseudomonadati Pseudomonadota Alphaproteobacteria       alpha proteobacterium IMCC14465

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;