RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA520845", tax_clade = "Methanomada group" and tax_kingdom = "Methanobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 3 ✖

tax_clade 1

  • Methanomada group · 3 ✖

bioproject 1

  • PRJNA520845 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27866769 27866769 PRJNA520845_P_NODE_114005_length_349_cov_1.115942_g112506_i0 PRJNA520845 114005 349 1.115942 3.89463758 Methanosphaera sp. 2666342 Archaea Archaea 52.4 5.48e-5   NR MEE3419037.1 2666342 g112506 i0 29.9 1.00573065902579 117 78 98 3 348 7 933 1048 MEE3419037.1 hypothetical protein [Methanosphaera sp.] diamond 351 52.4 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera sp.
27993322 27993322 PRJNA520845_P_NODE_151065_length_304_cov_1.000000_g149566_i0 PRJNA520845 151065 304 1 3.04 Methanosphaera sp. 2666342 Archaea Archaea 76.6 9.88e-14   NR MEE3419037.1 2666342 g149566 i0 41 0.819078947368421 83 47 79.9 1 297 55 931 1013 MEE3419037.1 hypothetical protein [Methanosphaera sp.] diamond 249 76.6 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera sp.
31815612 31815612 PRJNA520845_P_NODE_166697_length_288_cov_1.432558_g165198_i0 PRJNA520845 166697 288 1.432558 4.12576704 Methanosphaera sp. 2666342 Archaea Archaea 64.7 1.24e-9   NR MEE3325117.1 2666342 g165198 i0 30.3 1.13541666666667 109 51 90.6 3 3 263 1062 1167 MEE3325117.1 hypothetical protein [Methanosphaera sp.] diamond 327 64.7 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;