RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA520845", tax_clade = "FCB group" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA520845 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9419763 9419763 PRJNA520845_P_NODE_263408_length_241_cov_1.607143_g261909_i0 PRJNA520845 263408 241 1.607143 3.87321463 Rhodothermales bacterium 2306054 Bacteria Bacteria 135 1.34e-38   NR HMB92953.1 2306054 g261909 i0 74.7 4.9045643153527 79 20 98.3 0 3 239 38 116 HMB92953.1 50S ribosomal protein L13 [Rhodothermales bacterium] diamond 1182 135 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales     Rhodothermales bacterium
28024920 28024920 PRJNA520845_P_NODE_241225_length_246_cov_0.890173_g239726_i0 PRJNA520845 241225 246 0.890173 2.18982558 Longibacter salinarum 1850348 Bacteria Bacteria 75.5 6.82e-14   NR WP_245846120.1 1850348 g239726 i0 56.9 2.10975609756098 58 24 70.7 1 246 73 268 324 WP_245846120.1 oxygen-dependent coproporphyrinogen oxidase [Longibacter salinarum] diamond 519 75.5 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Salisaetaceae Longibacter Longibacter salinarum
28292589 28292589 PRJNA520845_P_NODE_173766_length_283_cov_0.819048_g172267_i0 PRJNA520845 173766 283 0.819048 2.31790584 Pseudomonadati 3379134 Bacteria Bacteria 112 2.2e-26   NR WP_072714491.1 633813 g172267 i0 65.5 2.62897526501767 84 28 89 1 31 282 3 85 WP_072714491.1 bifunctional sulfate adenylyltransferase/adenylylsulfate kinase [Rhodothermus profundi] diamond 744 112 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae Rhodothermus Rhodothermus profundi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;