RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where bioproject = "PRJNA520845", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 8 ✖

tax_clade 1

  • Amoebozoa · 8 ✖

bioproject 1

  • PRJNA520845 · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
491262 491262 PRJNA520845_P_NODE_254701_length_243_cov_0.905882_g253202_i0 PRJNA520845 254701 243 0.905882 2.20129326 Saccamoeba lacustris 704142 Tubulinea other_Eukaryota 157 1.3e-45   NR AFX84551.1 704142 g253202 i0 98.8 1 81 1 100 0 1 243 7 87 AFX84551.1 alpha tubulin, partial [Saccamoeba lacustris] diamond 243 157 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba lacustris
4939967 4939967 PRJNA520845_P_NODE_243604_length_245_cov_1.447674_g242105_i0 PRJNA520845 243604 245 1.447674 3.5468013 Vermamoeba 1260114 Tubulinea other_Eukaryota 451 1.87e-122   NTclustered gi|909719645|gb|KT185625.1| 5778 g242105 i0 100 54.2 244 0 99 0 2 245 5496 5253 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 13279 451 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
8143935 8143935 PRJNA520845_P_NODE_237827_length_247_cov_0.879310_g236328_i0 PRJNA520845 237827 247 0.87931 2.1718957 Copromyxa protea 931554 Tubulinea other_Eukaryota 254 5.699999999999999e-63   NTclustered gi|508737347|dbj|AB766053.1| 931554 g236328 i0 85.774 36.6072874493927 239 34 97 0 1 239 190 428 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 9042 254 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
8144368 8144368 PRJNA520845_P_NODE_254307_length_243_cov_0.905882_g252808_i0 PRJNA520845 254307 243 0.905882 2.20129326 Amoeba proteus 5775 Tubulinea other_Eukaryota 139 1.75e-37   NR AAP88974.1 5775 g252808 i0 78.8 1.97530864197531 80 17 98.8 0 2 241 65 144 AAP88974.1 S-adenosylmethionine synthetase 2 [Amoeba proteus] diamond 480 139 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
10691227 10691227 PRJNA520845_P_NODE_111429_length_353_cov_0.907143_g109930_i0 PRJNA520845 111429 353 0.907143 3.20221479 Paraflabellula hoguae 136459 Tubulinea other_Eukaryota 193 1.88e-44   NTclustered gi|145386791|gb|EF216916.1| 136459 g109930 i0 90.476 38.2549575070822 147 13 41 1 149 294 1352 1498 Paraflabellula hoguae 28S large subunit ribosomal RNA gene, partial sequence blastn 13504 193 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Paraflabellula Paraflabellula hoguae
20895546 20895546 PRJNA520845_P_NODE_98857_length_374_cov_1.023256_g97358_i0 PRJNA520845 98857 374 1.023256 3.82697744 Rhizamoeba saxonica 200886 Tubulinea other_Eukaryota 424 6.55e-114   NTclustered gi|300078497|gb|GU001159.1| 200886 g97358 i0 87.297 95.697860962566807 370 47 99 0 5 374 3035 2666 Rhizamoeba saxonica 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 35791 424 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Rhizamoeba Rhizamoeba saxonica
23439605 23439605 PRJNA520845_P_NODE_101799_length_369_cov_0.905405_g100300_i0 PRJNA520845 101799 369 0.905405 3.34094445 Pyxidicula operculata 1078852 Tubulinea other_Eukaryota 604 2.149999999999999e-168   NTclustered gi|345452598|gb|JF694317.1| 1078852 g100300 i0 96.206 99.8644986449865 369 14 100 0 1 369 472 104 Pyxidicula operculata clone 2 actin gene, partial cds blastn 36850 604 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida   Pyxidicula Pyxidicula operculata
28940730 28940730 PRJNA520845_P_NODE_56968_length_494_cov_1.665083_g55474_i0 PRJNA520845 56968 494 1.665083 8.22551002 Saccamoeba lacustris 704142 Tubulinea other_Eukaryota 234 1.38e-74   NR AFX73097.1 704142 g55474 i0 72 0.977732793522267 161 41 97.8 1 12 494 102 258 AFX73097.1 elongation factor 2 alpha, partial [Saccamoeba lacustris] diamond 483 234 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba lacustris

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;